Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB1P09429 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB1P09429 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
HMGB1P09429 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB1P09429 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB1P09429 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB1P09429 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB1P09429 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB1P09429 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB1P09429 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC18.28■□□□□ 0.52
HMGB1P09429 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGB1P09429 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGB1P09429 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC18.28■□□□□ 0.52
HMGB1P09429 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC18.27■□□□□ 0.52
HMGB1P09429 GPI-205ENST00000586425 1799 ntTSL 5 BASIC18.27■□□□□ 0.52
HMGB1P09429 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGB1P09429 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGB1P09429 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGB1P09429 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HMGB1P09429 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
HMGB1P09429 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
HMGB1P09429 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGB1P09429 AC063926.3-201ENST00000624734 5658 ntBASIC18.27■□□□□ 0.52
HMGB1P09429 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HMGB1P09429 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC18.27■□□□□ 0.52
HMGB1P09429 HNRNPA1P40-201ENST00000426371 1278 ntBASIC18.27■□□□□ 0.52
HMGB1P09429 INGX-202ENST00000489074 768 ntBASIC18.27■□□□□ 0.52
HMGB1P09429 GAPDHP40-201ENST00000505218 1006 ntBASIC18.27■□□□□ 0.52
HMGB1P09429 TPRX2P-201ENST00000535362 881 ntBASIC18.27■□□□□ 0.52
HMGB1P09429 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
HMGB1P09429 NAA60-208ENST00000570819 833 ntTSL 2 BASIC18.27■□□□□ 0.52
HMGB1P09429 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC18.27■□□□□ 0.52
HMGB1P09429 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC18.27■□□□□ 0.52
HMGB1P09429 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGB1P09429 SERF2-217ENST00000630046 862 ntTSL 5 BASIC18.27■□□□□ 0.52
HMGB1P09429 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
HMGB1P09429 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC18.27■□□□□ 0.52
HMGB1P09429 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGB1P09429 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HMGB1P09429 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
HMGB1P09429 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
HMGB1P09429 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HMGB1P09429 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
HMGB1P09429 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HMGB1P09429 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
HMGB1P09429 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HMGB1P09429 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC18.26■□□□□ 0.51
HMGB1P09429 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
HMGB1P09429 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 MARS-233ENST00000628866 2583 ntTSL 5 BASIC18.26■□□□□ 0.51
HMGB1P09429 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC18.26■□□□□ 0.51
HMGB1P09429 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
HMGB1P09429 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
HMGB1P09429 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC18.26■□□□□ 0.51
HMGB1P09429 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC18.26■□□□□ 0.51
HMGB1P09429 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC18.26■□□□□ 0.51
HMGB1P09429 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC18.26■□□□□ 0.51
HMGB1P09429 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGB1P09429 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB1P09429 GSN-215ENST00000545652 2428 ntTSL 2 BASIC18.25■□□□□ 0.51
HMGB1P09429 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB1P09429 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC18.25■□□□□ 0.51
HMGB1P09429 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
HMGB1P09429 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
HMGB1P09429 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB1P09429 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB1P09429 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB1P09429 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC18.25■□□□□ 0.51
HMGB1P09429 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC18.25■□□□□ 0.51
HMGB1P09429 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC18.25■□□□□ 0.51
HMGB1P09429 PCDHGB8P-201ENST00000502926 1973 ntBASIC18.25■□□□□ 0.51
HMGB1P09429 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB1P09429 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms