Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDKL5O76039 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC18.04■□□□□ 0.48
CDKL5O76039 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC18.04■□□□□ 0.48
CDKL5O76039 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CDKL5O76039 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDKL5O76039 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDKL5O76039 AL596257.1-201ENST00000641463 2694 ntBASIC18.04■□□□□ 0.48
CDKL5O76039 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDKL5O76039 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDKL5O76039 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CDKL5O76039 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC18.03■□□□□ 0.48
CDKL5O76039 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CDKL5O76039 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC18.03■□□□□ 0.48
CDKL5O76039 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDKL5O76039 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDKL5O76039 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDKL5O76039 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC18.03■□□□□ 0.48
CDKL5O76039 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CDKL5O76039 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDKL5O76039 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDKL5O76039 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC18.03■□□□□ 0.48
CDKL5O76039 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDKL5O76039 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDKL5O76039 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CDKL5O76039 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CDKL5O76039 RHOA-206ENST00000454011 889 ntTSL 2 BASIC18.03■□□□□ 0.48
CDKL5O76039 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CDKL5O76039 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC18.03■□□□□ 0.48
CDKL5O76039 SPDYE18-201ENST00000510091 1050 ntBASIC18.03■□□□□ 0.48
CDKL5O76039 FTH1-202ENST00000526640 786 ntTSL 2 BASIC18.03■□□□□ 0.48
CDKL5O76039 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDKL5O76039 AC104794.3-201ENST00000566840 1248 ntBASIC18.03■□□□□ 0.48
CDKL5O76039 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC18.03■□□□□ 0.48
CDKL5O76039 AC011467.4-201ENST00000594891 528 ntBASIC18.03■□□□□ 0.48
CDKL5O76039 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC18.03■□□□□ 0.48
CDKL5O76039 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CDKL5O76039 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CDKL5O76039 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDKL5O76039 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC18.03■□□□□ 0.48
CDKL5O76039 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CDKL5O76039 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDKL5O76039 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CDKL5O76039 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC18.03■□□□□ 0.48
CDKL5O76039 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDKL5O76039 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CDKL5O76039 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDKL5O76039 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CDKL5O76039 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC18.02■□□□□ 0.48
CDKL5O76039 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CDKL5O76039 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC18.02■□□□□ 0.48
CDKL5O76039 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CDKL5O76039 AGAP7P-201ENST00000582299 2062 ntBASIC18.02■□□□□ 0.48
CDKL5O76039 AGAP14-201ENST00000624701 2060 ntBASIC18.02■□□□□ 0.48
CDKL5O76039 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDKL5O76039 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDKL5O76039 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDKL5O76039 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CDKL5O76039 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDKL5O76039 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDKL5O76039 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CDKL5O76039 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDKL5O76039 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDKL5O76039 MRPS18AP1-201ENST00000414458 589 ntBASIC18.02■□□□□ 0.48
CDKL5O76039 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC18.02■□□□□ 0.48
CDKL5O76039 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC18.02■□□□□ 0.48
CDKL5O76039 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDKL5O76039 REEP4-207ENST00000523293 913 ntTSL 3 BASIC18.02■□□□□ 0.48
CDKL5O76039 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDKL5O76039 AC036164.1-201ENST00000570544 333 ntBASIC18.02■□□□□ 0.48
CDKL5O76039 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CDKL5O76039 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC18.02■□□□□ 0.48
CDKL5O76039 AL391069.4-201ENST00000609583 481 ntBASIC18.02■□□□□ 0.48
CDKL5O76039 RNA5-8SN1-201ENST00000610460 153 ntBASIC18.02■□□□□ 0.48
CDKL5O76039 RNA5-8SN5-202ENST00000612463 153 ntBASIC18.02■□□□□ 0.48
CDKL5O76039 RNA5-8SN4-201ENST00000613359 153 ntBASIC18.02■□□□□ 0.48
CDKL5O76039 RNA5-8SN5-201ENST00000619471 153 ntBASIC18.02■□□□□ 0.48
CDKL5O76039 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDKL5O76039 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CDKL5O76039 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CDKL5O76039 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CDKL5O76039 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CDKL5O76039 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CDKL5O76039 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
CDKL5O76039 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
CDKL5O76039 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CDKL5O76039 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
CDKL5O76039 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CDKL5O76039 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
CDKL5O76039 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CDKL5O76039 AC103702.1-201ENST00000548801 2630 ntBASIC18.02■□□□□ 0.47
CDKL5O76039 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDKL5O76039 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDKL5O76039 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDKL5O76039 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CDKL5O76039 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDKL5O76039 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDKL5O76039 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC18.01■□□□□ 0.47
CDKL5O76039 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDKL5O76039 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CDKL5O76039 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms