Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 WASH3P-207ENST00000560956 1394 ntBASIC12.6□□□□□ -0.39
FOXA2Q9Y261 FO538757.1-201ENST00000623083 1397 ntBASIC12.6□□□□□ -0.39
FOXA2Q9Y261 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 WRB-204ENST00000398753 699 ntTSL 3 BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 SATB1-217ENST00000493952 626 ntTSL 3 BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 BANF1P1-201ENST00000553684 263 ntBASIC12.6□□□□□ -0.39
FOXA2Q9Y261 RPL28-205ENST00000558131 444 ntTSL 5 BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 COQ4-205ENST00000609948 956 ntTSL 2 BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 AC073592.8-201ENST00000624126 511 ntBASIC12.6□□□□□ -0.39
FOXA2Q9Y261 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC12.6□□□□□ -0.39
FOXA2Q9Y261 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 MYO15B-237ENST00000642007 4893 ntBASIC12.59□□□□□ -0.39
FOXA2Q9Y261 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 HLA-DRB6-201ENST00000411500 1235 ntBASIC12.59□□□□□ -0.39
FOXA2Q9Y261 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 SERBP1P3-201ENST00000459980 809 ntBASIC12.59□□□□□ -0.39
FOXA2Q9Y261 HLA-V-204ENST00000476601 1289 ntBASIC12.59□□□□□ -0.39
FOXA2Q9Y261 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 AL158211.3-201ENST00000607385 239 ntBASIC12.59□□□□□ -0.39
FOXA2Q9Y261 GPER1-207ENST00000619052 571 ntTSL 2 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 ORC5-208ENST00000626700 344 ntTSL 3 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms