Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CLN6Q9NWW5 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 AL031284.1-201ENST00000419297 478 ntBASIC14.23□□□□□ -0.13
CLN6Q9NWW5 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 PPIE-208ENST00000470213 927 ntTSL 3 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 KRT18P56-201ENST00000507275 550 ntBASIC14.23□□□□□ -0.13
CLN6Q9NWW5 CCDC74BP1-201ENST00000508880 1123 ntBASIC14.23□□□□□ -0.13
CLN6Q9NWW5 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 AL049840.3-201ENST00000602669 611 ntBASIC14.23□□□□□ -0.13
CLN6Q9NWW5 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 MED16-214ENST00000617672 554 ntTSL 5 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 AL161645.1-201ENST00000622716 1255 ntBASIC14.23□□□□□ -0.13
CLN6Q9NWW5 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLN6Q9NWW5 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 AC005840.4-201ENST00000541242 2494 ntBASIC14.22□□□□□ -0.13
CLN6Q9NWW5 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 CSF3-203ENST00000394148 622 ntTSL 3 BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC14.22□□□□□ -0.13
CLN6Q9NWW5 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms