Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 AC013726.1-201ENST00000563747 2285 ntBASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 AC007967.2-201ENST00000432613 625 ntBASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 NAA15-202ENST00000398947 6072 ntAPPRIS ALT1 TSL 5 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 MARS-233ENST00000628866 2583 ntTSL 5 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 AC112191.1-201ENST00000523689 701 ntBASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 CD63-204ENST00000546939 779 ntTSL 3 BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 PAM16-215ENST00000577031 548 ntTSL 4 BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 AC104692.2-201ENST00000603054 253 ntBASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 HADH-212ENST00000638621 741 ntTSL 5 BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 AC131212.3-201ENST00000624087 4219 ntBASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CHMP1AQ9HD42 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC13.46□□□□□ -0.26
CHMP1AQ9HD42 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
CHMP1AQ9HD42 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CHMP1AQ9HD42 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.46□□□□□ -0.26
CHMP1AQ9HD42 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CHMP1AQ9HD42 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 2472 ms