Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 SOD2-202ENST00000367054 815 ntTSL 2 BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 LINC01165-201ENST00000445190 1623 ntBASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 AC026803.1-201ENST00000569130 274 ntBASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 DDX5-235ENST00000630471 473 ntTSL 4 BASIC19.51■□□□□ 0.71
SHANK3Q9BYB0 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 AC023090.2-201ENST00000625182 2110 ntBASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 AC090616.6-203ENST00000579186 1945 ntBASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 TLE1P1-201ENST00000422965 589 ntBASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 AC141586.1-203ENST00000567242 366 ntBASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 CICP13-201ENST00000422015 2789 ntBASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SHANK3Q9BYB0 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 AL590440.2-201ENST00000641973 1595 ntBASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 AC136759.1-202ENST00000530858 2194 ntBASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 RNA5SP359-201ENST00000364838 113 ntBASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 OR2R1P-201ENST00000441404 914 ntBASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 NAGK-204ENST00000443872 878 ntTSL 3 BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 MIR6720-201ENST00000611664 98 ntBASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC19.49■□□□□ 0.71
SHANK3Q9BYB0 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms