Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PAAF1Q9BRP4 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.42■□□□□ 0.22
PAAF1Q9BRP4 REXO1L5P-201ENST00000622260 2098 ntBASIC16.42■□□□□ 0.22
PAAF1Q9BRP4 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
PAAF1Q9BRP4 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PAAF1Q9BRP4 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
PAAF1Q9BRP4 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PAAF1Q9BRP4 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PAAF1Q9BRP4 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.42■□□□□ 0.22
PAAF1Q9BRP4 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PAAF1Q9BRP4 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PAAF1Q9BRP4 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
PAAF1Q9BRP4 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PAAF1Q9BRP4 AL157414.3-201ENST00000624276 1954 ntBASIC16.42■□□□□ 0.22
PAAF1Q9BRP4 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PAAF1Q9BRP4 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16.42■□□□□ 0.22
PAAF1Q9BRP4 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PAAF1Q9BRP4 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
PAAF1Q9BRP4 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC16.42■□□□□ 0.22
PAAF1Q9BRP4 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PAAF1Q9BRP4 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PAAF1Q9BRP4 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 MST1L-201ENST00000442552 2185 ntBASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 LSM5-207ENST00000410044 687 ntTSL 3 BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 AL645728.2-202ENST00000641679 227 ntBASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 SLC9A7P1-202ENST00000556476 2239 ntBASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PAAF1Q9BRP4 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 AL645937.2-201ENST00000396808 931 ntBASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 DERL2-202ENST00000570848 657 ntTSL 5 BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 RN7SL48P-201ENST00000579283 293 ntBASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 MIR6787-201ENST00000616675 61 ntBASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.4■□□□□ 0.22
PAAF1Q9BRP4 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms