Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USP28Q96RU2 USP35-204ENST00000530267 2419 ntTSL 2 BASIC17.76■□□□□ 0.43
USP28Q96RU2 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP28Q96RU2 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP28Q96RU2 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP28Q96RU2 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
USP28Q96RU2 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
USP28Q96RU2 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP28Q96RU2 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP28Q96RU2 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
USP28Q96RU2 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
USP28Q96RU2 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP28Q96RU2 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.75■□□□□ 0.43
USP28Q96RU2 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP28Q96RU2 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC17.75■□□□□ 0.43
USP28Q96RU2 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.75■□□□□ 0.43
USP28Q96RU2 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC17.75■□□□□ 0.43
USP28Q96RU2 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.75■□□□□ 0.43
USP28Q96RU2 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC17.75■□□□□ 0.43
USP28Q96RU2 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC17.75■□□□□ 0.43
USP28Q96RU2 TBCB-211ENST00000589996 724 ntTSL 3 BASIC17.75■□□□□ 0.43
USP28Q96RU2 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP28Q96RU2 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC17.75■□□□□ 0.43
USP28Q96RU2 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC17.75■□□□□ 0.43
USP28Q96RU2 AL109936.8-201ENST00000641772 604 ntBASIC17.75■□□□□ 0.43
USP28Q96RU2 AL121723.1-201ENST00000445194 1519 ntBASIC17.75■□□□□ 0.43
USP28Q96RU2 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP28Q96RU2 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP28Q96RU2 AC007191.1-201ENST00000623179 2995 ntBASIC17.75■□□□□ 0.43
USP28Q96RU2 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP28Q96RU2 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USP28Q96RU2 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP28Q96RU2 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USP28Q96RU2 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
USP28Q96RU2 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
USP28Q96RU2 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC17.74■□□□□ 0.43
USP28Q96RU2 REXO1L4P-201ENST00000605109 1937 ntBASIC17.74■□□□□ 0.43
USP28Q96RU2 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
USP28Q96RU2 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC17.74■□□□□ 0.43
USP28Q96RU2 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP28Q96RU2 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC17.74■□□□□ 0.43
USP28Q96RU2 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC17.74■□□□□ 0.43
USP28Q96RU2 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP28Q96RU2 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP28Q96RU2 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP28Q96RU2 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP28Q96RU2 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP28Q96RU2 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
USP28Q96RU2 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
USP28Q96RU2 WRB-204ENST00000398753 699 ntTSL 3 BASIC17.74■□□□□ 0.43
USP28Q96RU2 TOMM22P5-201ENST00000416399 439 ntBASIC17.74■□□□□ 0.43
USP28Q96RU2 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC17.74■□□□□ 0.43
USP28Q96RU2 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.74■□□□□ 0.43
USP28Q96RU2 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
USP28Q96RU2 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.74■□□□□ 0.43
USP28Q96RU2 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
USP28Q96RU2 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
USP28Q96RU2 AC011467.4-201ENST00000594891 528 ntBASIC17.74■□□□□ 0.43
USP28Q96RU2 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP28Q96RU2 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC17.74■□□□□ 0.43
USP28Q96RU2 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
USP28Q96RU2 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
USP28Q96RU2 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP28Q96RU2 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC17.74■□□□□ 0.43
USP28Q96RU2 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP28Q96RU2 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USP28Q96RU2 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
USP28Q96RU2 USP28-214ENST00000545540 3431 ntTSL 2 BASIC17.73■□□□□ 0.43
USP28Q96RU2 TUBB3P1-201ENST00000405796 1332 ntBASIC17.73■□□□□ 0.43
USP28Q96RU2 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC17.73■□□□□ 0.43
USP28Q96RU2 AC005912.2-201ENST00000619492 2400 ntBASIC17.73■□□□□ 0.43
USP28Q96RU2 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
USP28Q96RU2 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP28Q96RU2 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP28Q96RU2 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC17.73■□□□□ 0.43
USP28Q96RU2 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC17.73■□□□□ 0.43
USP28Q96RU2 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP28Q96RU2 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP28Q96RU2 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP28Q96RU2 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP28Q96RU2 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
USP28Q96RU2 FAM8A3P-201ENST00000427218 844 ntBASIC17.73■□□□□ 0.43
USP28Q96RU2 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.73■□□□□ 0.43
USP28Q96RU2 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP28Q96RU2 RN7SL618P-201ENST00000477850 296 ntBASIC17.73■□□□□ 0.43
USP28Q96RU2 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC17.73■□□□□ 0.43
USP28Q96RU2 AC074044.1-201ENST00000609673 707 ntBASIC17.73■□□□□ 0.43
USP28Q96RU2 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.73■□□□□ 0.43
USP28Q96RU2 AC073592.8-201ENST00000624126 511 ntBASIC17.73■□□□□ 0.43
USP28Q96RU2 SLC9A7P1-202ENST00000556476 2239 ntBASIC17.73■□□□□ 0.43
USP28Q96RU2 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
USP28Q96RU2 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USP28Q96RU2 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP28Q96RU2 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
USP28Q96RU2 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.72■□□□□ 0.43
USP28Q96RU2 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC17.72■□□□□ 0.43
USP28Q96RU2 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USP28Q96RU2 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
USP28Q96RU2 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
USP28Q96RU2 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms