Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 AP000593.2-201ENST00000542775 1433 ntBASIC14.97□□□□□ -0.01
VPS13AQ96RL7 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 PAM16-211ENST00000575848 518 ntTSL 3 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS13AQ96RL7 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 AMT-239ENST00000636865 1914 ntTSL 5 BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 AK6-201ENST00000380818 1183 ntTSL 2 BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 AL645937.2-201ENST00000396808 931 ntBASIC14.96□□□□□ -0.01
VPS13AQ96RL7 RN7SKP175-201ENST00000408472 289 ntBASIC14.96□□□□□ -0.01
VPS13AQ96RL7 PSMD4P1-201ENST00000433951 1109 ntBASIC14.96□□□□□ -0.01
VPS13AQ96RL7 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 FAM58BP-201ENST00000439056 645 ntBASIC14.96□□□□□ -0.01
VPS13AQ96RL7 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
VPS13AQ96RL7 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
VPS13AQ96RL7 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.02
VPS13AQ96RL7 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
VPS13AQ96RL7 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.96□□□□□ -0.02
VPS13AQ96RL7 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
VPS13AQ96RL7 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
VPS13AQ96RL7 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 KRT17P4-201ENST00000429445 819 ntBASIC14.95□□□□□ -0.02
VPS13AQ96RL7 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 LINC00431-202ENST00000636375 159 ntBASIC14.95□□□□□ -0.02
VPS13AQ96RL7 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 SUPT20HL2-201ENST00000486479 2409 ntBASIC14.95□□□□□ -0.02
VPS13AQ96RL7 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 AL135901.1-201ENST00000451812 333 ntBASIC14.95□□□□□ -0.02
VPS13AQ96RL7 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 MRPL37P1-201ENST00000592451 1337 ntBASIC14.95□□□□□ -0.02
VPS13AQ96RL7 AC004686.1-201ENST00000605113 538 ntBASIC14.95□□□□□ -0.02
VPS13AQ96RL7 NAMA-206ENST00000605377 509 ntTSL 5 BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
VPS13AQ96RL7 FAM90A2P-201ENST00000511144 1395 ntBASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms