Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TTC28Q96AY4 TCEAL5-201ENST00000372680 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TTC28Q96AY4 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC15.33■□□□□ 0.04
TTC28Q96AY4 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TTC28Q96AY4 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TTC28Q96AY4 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC15.33■□□□□ 0.04
TTC28Q96AY4 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC15.33■□□□□ 0.04
TTC28Q96AY4 URB1-AS1-201ENST00000534991 831 ntBASIC15.33■□□□□ 0.04
TTC28Q96AY4 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TTC28Q96AY4 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
TTC28Q96AY4 AC005962.1-201ENST00000584100 773 ntBASIC15.33■□□□□ 0.04
TTC28Q96AY4 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
TTC28Q96AY4 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TTC28Q96AY4 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TTC28Q96AY4 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TTC28Q96AY4 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TTC28Q96AY4 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TTC28Q96AY4 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TTC28Q96AY4 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TTC28Q96AY4 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
TTC28Q96AY4 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TTC28Q96AY4 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
TTC28Q96AY4 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TTC28Q96AY4 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
TTC28Q96AY4 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC15.32■□□□□ 0.04
TTC28Q96AY4 AL512306.1-201ENST00000432698 848 ntBASIC15.32■□□□□ 0.04
TTC28Q96AY4 RNA5SP417-201ENST00000516459 108 ntBASIC15.32■□□□□ 0.04
TTC28Q96AY4 AP002490.2-201ENST00000524791 560 ntBASIC15.32■□□□□ 0.04
TTC28Q96AY4 AC068831.5-201ENST00000557387 328 ntBASIC15.32■□□□□ 0.04
TTC28Q96AY4 USB1-205ENST00000561743 1135 ntTSL 3 BASIC15.32■□□□□ 0.04
TTC28Q96AY4 RN7SL121P-201ENST00000584223 273 ntBASIC15.32■□□□□ 0.04
TTC28Q96AY4 AC020922.4-201ENST00000621389 339 ntBASIC15.32■□□□□ 0.04
TTC28Q96AY4 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
TTC28Q96AY4 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TTC28Q96AY4 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC15.32■□□□□ 0.04
TTC28Q96AY4 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.32■□□□□ 0.04
TTC28Q96AY4 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TTC28Q96AY4 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TTC28Q96AY4 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
TTC28Q96AY4 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
TTC28Q96AY4 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.32■□□□□ 0.04
TTC28Q96AY4 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TTC28Q96AY4 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TTC28Q96AY4 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TTC28Q96AY4 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
TTC28Q96AY4 AC011840.2-201ENST00000563063 1520 ntBASIC15.32■□□□□ 0.04
TTC28Q96AY4 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TTC28Q96AY4 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.32■□□□□ 0.04
TTC28Q96AY4 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.32■□□□□ 0.04
TTC28Q96AY4 AC092580.1-201ENST00000433998 658 ntBASIC15.32■□□□□ 0.04
TTC28Q96AY4 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC15.32■□□□□ 0.04
TTC28Q96AY4 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TTC28Q96AY4 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TTC28Q96AY4 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC15.32■□□□□ 0.04
TTC28Q96AY4 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC15.32■□□□□ 0.04
TTC28Q96AY4 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TTC28Q96AY4 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TTC28Q96AY4 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TTC28Q96AY4 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
TTC28Q96AY4 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TTC28Q96AY4 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
TTC28Q96AY4 AC027612.2-202ENST00000445955 1199 ntBASIC15.31■□□□□ 0.04
TTC28Q96AY4 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TTC28Q96AY4 VENTXP4-201ENST00000449029 958 ntBASIC15.31■□□□□ 0.04
TTC28Q96AY4 SLC25A15P1-201ENST00000456738 342 ntBASIC15.31■□□□□ 0.04
TTC28Q96AY4 SLC25A15P3-201ENST00000505530 290 ntBASIC15.31■□□□□ 0.04
TTC28Q96AY4 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC15.31■□□□□ 0.04
TTC28Q96AY4 AC010632.2-201ENST00000588369 1224 ntBASIC15.31■□□□□ 0.04
TTC28Q96AY4 AC004466.1-201ENST00000599515 1080 ntBASIC15.31■□□□□ 0.04
TTC28Q96AY4 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC15.31■□□□□ 0.04
TTC28Q96AY4 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.31■□□□□ 0.04
TTC28Q96AY4 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC15.31■□□□□ 0.04
TTC28Q96AY4 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TTC28Q96AY4 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
TTC28Q96AY4 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TTC28Q96AY4 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.31■□□□□ 0.04
TTC28Q96AY4 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
TTC28Q96AY4 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TTC28Q96AY4 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TTC28Q96AY4 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TTC28Q96AY4 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TTC28Q96AY4 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC15.31■□□□□ 0.04
TTC28Q96AY4 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TTC28Q96AY4 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC15.31■□□□□ 0.04
TTC28Q96AY4 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC15.31■□□□□ 0.04
TTC28Q96AY4 AC226150.1-201ENST00000544259 466 ntBASIC15.31■□□□□ 0.04
TTC28Q96AY4 NAT9-219ENST00000582524 573 ntTSL 4 BASIC15.31■□□□□ 0.04
TTC28Q96AY4 AC009884.2-201ENST00000603110 324 ntBASIC15.31■□□□□ 0.04
TTC28Q96AY4 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC15.31■□□□□ 0.04
TTC28Q96AY4 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TTC28Q96AY4 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.31■□□□□ 0.04
TTC28Q96AY4 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
TTC28Q96AY4 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TTC28Q96AY4 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TTC28Q96AY4 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TTC28Q96AY4 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TTC28Q96AY4 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TTC28Q96AY4 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TTC28Q96AY4 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TTC28Q96AY4 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms