Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 AL009178.2-201ENST00000597278 2719 ntBASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC13.61□□□□□ -0.23
CCDC54Q8NEL0 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 CEND1P1-201ENST00000451006 455 ntBASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 GATD1-206ENST00000526325 756 ntTSL 5 BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 AC022145.2-201ENST00000598203 171 ntBASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 PEG13-201ENST00000631594 5667 ntBASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 GPI-205ENST00000586425 1799 ntTSL 5 BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CCDC54Q8NEL0 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 KRT8P12-202ENST00000472924 1397 ntBASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 MIR574-201ENST00000385209 96 ntBASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 FAM8A3P-201ENST00000427218 844 ntBASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 RPP21-221ENST00000428040 594 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 AP000344.2-201ENST00000512987 629 ntBASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 PUS1-205ENST00000535067 838 ntTSL 3 BASIC13.59□□□□□ -0.23
CCDC54Q8NEL0 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms