Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 RNU1-129P-201ENST00000384064 167 ntBASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 VMO1-203ENST00000416307 712 ntTSL 2 BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 AL671277.1-201ENST00000429656 993 ntBASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 DNAJB3-202ENST00000449667 1266 ntBASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 SPDYE11-202ENST00000450699 704 ntBASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 SPDYE9P-201ENST00000570642 692 ntBASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 U1.21-201ENST00000580816 167 ntBASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 SPDYE10P-202ENST00000612005 668 ntBASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 SPDYE8P-202ENST00000612377 668 ntBASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 RELA-227ENST00000615805 2236 ntTSL 5 BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC14.97□□□□□ -0.01
PPP4R4Q6NUP7 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 AC245100.5-201ENST00000452108 331 ntBASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 PUS1-205ENST00000535067 838 ntTSL 3 BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 AL009183.1-201ENST00000603760 355 ntBASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 AL161645.1-201ENST00000622716 1255 ntBASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 AC140479.7-201ENST00000636301 2332 ntBASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 AC092902.6-201ENST00000641783 218 ntBASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC14.96□□□□□ -0.01
PPP4R4Q6NUP7 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC14.96□□□□□ -0.02
PPP4R4Q6NUP7 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
PPP4R4Q6NUP7 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.02
PPP4R4Q6NUP7 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
PPP4R4Q6NUP7 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
PPP4R4Q6NUP7 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.96□□□□□ -0.02
PPP4R4Q6NUP7 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
PPP4R4Q6NUP7 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC14.95□□□□□ -0.02
PPP4R4Q6NUP7 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms