Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.37□□□□□ -0.11
RNF4P78317 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.37□□□□□ -0.11
RNF4P78317 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
RNF4P78317 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
RNF4P78317 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 RPL5P21-201ENST00000404620 815 ntBASIC14.37□□□□□ -0.11
RNF4P78317 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
RNF4P78317 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 AL162726.2-201ENST00000438986 1017 ntBASIC14.37□□□□□ -0.11
RNF4P78317 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.37□□□□□ -0.11
RNF4P78317 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.37□□□□□ -0.11
RNF4P78317 RN7SL837P-201ENST00000463010 287 ntBASIC14.37□□□□□ -0.11
RNF4P78317 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.37□□□□□ -0.11
RNF4P78317 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.37□□□□□ -0.11
RNF4P78317 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.37□□□□□ -0.11
RNF4P78317 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.37□□□□□ -0.11
RNF4P78317 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.37□□□□□ -0.11
RNF4P78317 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.37□□□□□ -0.11
RNF4P78317 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.37□□□□□ -0.11
RNF4P78317 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.37□□□□□ -0.11
RNF4P78317 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC14.37□□□□□ -0.11
RNF4P78317 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.37□□□□□ -0.11
RNF4P78317 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.37□□□□□ -0.11
RNF4P78317 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RNF4P78317 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.36□□□□□ -0.11
RNF4P78317 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
RNF4P78317 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.36□□□□□ -0.11
RNF4P78317 AC087481.3-201ENST00000602886 1894 ntBASIC14.36□□□□□ -0.11
RNF4P78317 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
RNF4P78317 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.36□□□□□ -0.11
RNF4P78317 LINC00554-201ENST00000564841 3011 ntBASIC14.36□□□□□ -0.11
RNF4P78317 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
RNF4P78317 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.36□□□□□ -0.11
RNF4P78317 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 AL512384.1-201ENST00000406683 331 ntBASIC14.36□□□□□ -0.11
RNF4P78317 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC14.36□□□□□ -0.11
RNF4P78317 GAPDHP40-201ENST00000505218 1006 ntBASIC14.36□□□□□ -0.11
RNF4P78317 ENPP7P5-201ENST00000541031 1031 ntBASIC14.36□□□□□ -0.11
RNF4P78317 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.36□□□□□ -0.11
RNF4P78317 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.36□□□□□ -0.11
RNF4P78317 AC093813.1-201ENST00000605066 256 ntBASIC14.36□□□□□ -0.11
RNF4P78317 AC107373.2-201ENST00000607735 490 ntBASIC14.36□□□□□ -0.11
RNF4P78317 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC14.36□□□□□ -0.11
RNF4P78317 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
RNF4P78317 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
RNF4P78317 CU634019.7-201ENST00000624153 1185 ntBASIC14.36□□□□□ -0.11
RNF4P78317 FP236241.2-201ENST00000624906 1185 ntBASIC14.36□□□□□ -0.11
RNF4P78317 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.36□□□□□ -0.11
RNF4P78317 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC14.36□□□□□ -0.11
RNF4P78317 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
RNF4P78317 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.36□□□□□ -0.11
RNF4P78317 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RNF4P78317 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
RNF4P78317 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms