Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC20.24■□□□□ 0.83
RIPK4P57078 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
RIPK4P57078 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RIPK4P57078 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
RIPK4P57078 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC20.24■□□□□ 0.83
RIPK4P57078 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
RIPK4P57078 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
RIPK4P57078 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RIPK4P57078 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RIPK4P57078 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC20.24■□□□□ 0.83
RIPK4P57078 AC093525.8-201ENST00000624099 1342 ntBASIC20.24■□□□□ 0.83
RIPK4P57078 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
RIPK4P57078 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RIPK4P57078 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RIPK4P57078 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
RIPK4P57078 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RIPK4P57078 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RIPK4P57078 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
RIPK4P57078 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RIPK4P57078 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RIPK4P57078 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
RIPK4P57078 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RIPK4P57078 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
RIPK4P57078 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
RIPK4P57078 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
RIPK4P57078 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RIPK4P57078 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC20.23■□□□□ 0.83
RIPK4P57078 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
RIPK4P57078 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RIPK4P57078 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC20.23■□□□□ 0.83
RIPK4P57078 MBP-202ENST00000355994 2772 ntTSL 5 BASIC20.23■□□□□ 0.83
RIPK4P57078 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC20.23■□□□□ 0.83
RIPK4P57078 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RIPK4P57078 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RIPK4P57078 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
RIPK4P57078 AC004066.1-201ENST00000502488 802 ntBASIC20.23■□□□□ 0.83
RIPK4P57078 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
RIPK4P57078 BX539320.1-201ENST00000623759 877 ntBASIC20.23■□□□□ 0.83
RIPK4P57078 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC20.23■□□□□ 0.83
RIPK4P57078 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RIPK4P57078 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC20.23■□□□□ 0.83
RIPK4P57078 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC20.23■□□□□ 0.83
RIPK4P57078 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
RIPK4P57078 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RIPK4P57078 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RIPK4P57078 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RIPK4P57078 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC20.23■□□□□ 0.83
RIPK4P57078 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RIPK4P57078 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
RIPK4P57078 STRN-202ENST00000379213 2254 ntTSL 5 BASIC20.23■□□□□ 0.83
RIPK4P57078 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC20.23■□□□□ 0.83
RIPK4P57078 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RIPK4P57078 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RIPK4P57078 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC20.23■□□□□ 0.83
RIPK4P57078 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
RIPK4P57078 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RIPK4P57078 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RIPK4P57078 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
RIPK4P57078 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
RIPK4P57078 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RIPK4P57078 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RIPK4P57078 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RIPK4P57078 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RIPK4P57078 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
RIPK4P57078 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RIPK4P57078 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RIPK4P57078 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC20.22■□□□□ 0.83
RIPK4P57078 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RIPK4P57078 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RIPK4P57078 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
RIPK4P57078 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
RIPK4P57078 ACKR1-201ENST00000368121 1240 ntBASIC20.22■□□□□ 0.83
RIPK4P57078 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
RIPK4P57078 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RIPK4P57078 BAATP1-201ENST00000412284 1225 ntBASIC20.22■□□□□ 0.83
RIPK4P57078 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RIPK4P57078 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RIPK4P57078 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC20.22■□□□□ 0.83
RIPK4P57078 PTP4A1P2-201ENST00000546033 454 ntBASIC20.22■□□□□ 0.83
RIPK4P57078 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC20.22■□□□□ 0.83
RIPK4P57078 AC009486.1-201ENST00000569860 813 ntBASIC20.22■□□□□ 0.83
RIPK4P57078 SAMD11P1-201ENST00000571429 661 ntBASIC20.22■□□□□ 0.83
RIPK4P57078 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC20.22■□□□□ 0.83
RIPK4P57078 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC20.22■□□□□ 0.83
RIPK4P57078 INO80C-210ENST00000590757 595 ntTSL 2 BASIC20.22■□□□□ 0.83
RIPK4P57078 BTNL10-201ENST00000595971 695 ntBASIC20.22■□□□□ 0.83
RIPK4P57078 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RIPK4P57078 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RIPK4P57078 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RIPK4P57078 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RIPK4P57078 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RIPK4P57078 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RIPK4P57078 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RIPK4P57078 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
RIPK4P57078 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
RIPK4P57078 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC20.21■□□□□ 0.83
RIPK4P57078 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
RIPK4P57078 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
RIPK4P57078 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RIPK4P57078 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms