Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.54■□□□□ 0.08
XRCC1P18887 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.54■□□□□ 0.08
XRCC1P18887 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
XRCC1P18887 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.54■□□□□ 0.08
XRCC1P18887 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
XRCC1P18887 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
XRCC1P18887 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
XRCC1P18887 Z97205.2-201ENST00000564697 1639 ntBASIC15.54■□□□□ 0.08
XRCC1P18887 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.53■□□□□ 0.08
XRCC1P18887 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
XRCC1P18887 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.53■□□□□ 0.08
XRCC1P18887 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
XRCC1P18887 AC007541.1-201ENST00000570282 1469 ntBASIC15.53■□□□□ 0.08
XRCC1P18887 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
XRCC1P18887 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
XRCC1P18887 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
XRCC1P18887 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.53■□□□□ 0.08
XRCC1P18887 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
XRCC1P18887 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
XRCC1P18887 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
XRCC1P18887 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
XRCC1P18887 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
XRCC1P18887 AL391825.1-201ENST00000457671 1364 ntBASIC15.53■□□□□ 0.08
XRCC1P18887 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
XRCC1P18887 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
XRCC1P18887 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
XRCC1P18887 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
XRCC1P18887 AL359258.3-201ENST00000622910 2331 ntBASIC15.53■□□□□ 0.08
XRCC1P18887 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
XRCC1P18887 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
XRCC1P18887 SPDYE19P-201ENST00000338590 713 ntBASIC15.53■□□□□ 0.08
XRCC1P18887 RAD18-204ENST00000418463 563 ntTSL 4 BASIC15.53■□□□□ 0.08
XRCC1P18887 RAD18-205ENST00000421052 582 ntTSL 3 BASIC15.53■□□□□ 0.08
XRCC1P18887 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC15.53■□□□□ 0.08
XRCC1P18887 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC15.53■□□□□ 0.08
XRCC1P18887 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC15.53■□□□□ 0.08
XRCC1P18887 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
XRCC1P18887 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.53■□□□□ 0.08
XRCC1P18887 AC092337.1-201ENST00000568699 1129 ntBASIC15.53■□□□□ 0.08
XRCC1P18887 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
XRCC1P18887 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
XRCC1P18887 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
XRCC1P18887 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC15.53■□□□□ 0.08
XRCC1P18887 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.53■□□□□ 0.08
XRCC1P18887 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.53■□□□□ 0.08
XRCC1P18887 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
XRCC1P18887 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
XRCC1P18887 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC15.53■□□□□ 0.08
XRCC1P18887 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
XRCC1P18887 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
XRCC1P18887 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.53■□□□□ 0.08
XRCC1P18887 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
XRCC1P18887 PKD1P5-201ENST00000532415 10291 ntBASIC15.53■□□□□ 0.08
XRCC1P18887 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
XRCC1P18887 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
XRCC1P18887 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
XRCC1P18887 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
XRCC1P18887 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
XRCC1P18887 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
XRCC1P18887 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
XRCC1P18887 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC15.52■□□□□ 0.08
XRCC1P18887 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
XRCC1P18887 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
XRCC1P18887 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.08
XRCC1P18887 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.52■□□□□ 0.08
XRCC1P18887 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
XRCC1P18887 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
XRCC1P18887 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
XRCC1P18887 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
XRCC1P18887 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
XRCC1P18887 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
XRCC1P18887 COPE-202ENST00000349893 948 ntTSL 2 BASIC15.52■□□□□ 0.08
XRCC1P18887 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.52■□□□□ 0.08
XRCC1P18887 AZGP1P1-201ENST00000411909 902 ntBASIC15.52■□□□□ 0.08
XRCC1P18887 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
XRCC1P18887 DFFBP1-201ENST00000433250 979 ntBASIC15.52■□□□□ 0.08
XRCC1P18887 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC15.52■□□□□ 0.08
XRCC1P18887 GNAQP1-201ENST00000444815 1067 ntBASIC15.52■□□□□ 0.08
XRCC1P18887 AC093004.1-201ENST00000508850 424 ntBASIC15.52■□□□□ 0.08
XRCC1P18887 SPDYE18-201ENST00000510091 1050 ntBASIC15.52■□□□□ 0.08
XRCC1P18887 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.52■□□□□ 0.08
XRCC1P18887 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC15.52■□□□□ 0.08
XRCC1P18887 CDK4-206ENST00000549606 558 ntTSL 2 BASIC15.52■□□□□ 0.08
XRCC1P18887 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC15.52■□□□□ 0.08
XRCC1P18887 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC15.52■□□□□ 0.08
XRCC1P18887 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC15.52■□□□□ 0.08
XRCC1P18887 AL132655.2-201ENST00000596276 594 ntBASIC15.52■□□□□ 0.08
XRCC1P18887 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.52■□□□□ 0.08
XRCC1P18887 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.52■□□□□ 0.08
XRCC1P18887 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
XRCC1P18887 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.52■□□□□ 0.07
XRCC1P18887 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
XRCC1P18887 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
XRCC1P18887 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.52■□□□□ 0.07
XRCC1P18887 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC15.52■□□□□ 0.07
XRCC1P18887 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
XRCC1P18887 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
XRCC1P18887 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.52■□□□□ 0.07
XRCC1P18887 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
XRCC1P18887 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms