Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC17.45■□□□□ 0.38
CHMP2AO43633 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC17.45■□□□□ 0.38
CHMP2AO43633 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP2AO43633 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CHMP2AO43633 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC17.45■□□□□ 0.38
CHMP2AO43633 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP2AO43633 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP2AO43633 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP2AO43633 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CHMP2AO43633 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP2AO43633 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC17.45■□□□□ 0.38
CHMP2AO43633 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP2AO43633 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP2AO43633 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP2AO43633 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP2AO43633 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC17.45■□□□□ 0.38
CHMP2AO43633 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP2AO43633 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC17.45■□□□□ 0.38
CHMP2AO43633 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP2AO43633 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP2AO43633 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP2AO43633 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP2AO43633 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP2AO43633 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP2AO43633 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.44■□□□□ 0.38
CHMP2AO43633 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP2AO43633 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP2AO43633 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP2AO43633 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP2AO43633 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP2AO43633 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC17.44■□□□□ 0.38
CHMP2AO43633 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP2AO43633 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC17.44■□□□□ 0.38
CHMP2AO43633 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP2AO43633 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC17.44■□□□□ 0.38
CHMP2AO43633 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC17.44■□□□□ 0.38
CHMP2AO43633 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC17.44■□□□□ 0.38
CHMP2AO43633 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP2AO43633 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC17.44■□□□□ 0.38
CHMP2AO43633 WBP2-203ENST00000433525 928 ntTSL 2 BASIC17.44■□□□□ 0.38
CHMP2AO43633 AL162726.2-201ENST00000438986 1017 ntBASIC17.44■□□□□ 0.38
CHMP2AO43633 PFN2-205ENST00000461868 613 ntTSL 2 BASIC17.44■□□□□ 0.38
CHMP2AO43633 NAA50-208ENST00000497255 789 ntTSL 5 BASIC17.44■□□□□ 0.38
CHMP2AO43633 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP2AO43633 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC17.44■□□□□ 0.38
CHMP2AO43633 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC17.44■□□□□ 0.38
CHMP2AO43633 AC026410.3-201ENST00000514280 936 ntBASIC17.44■□□□□ 0.38
CHMP2AO43633 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP2AO43633 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC17.44■□□□□ 0.38
CHMP2AO43633 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP2AO43633 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CHMP2AO43633 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP2AO43633 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP2AO43633 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP2AO43633 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.44■□□□□ 0.38
CHMP2AO43633 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP2AO43633 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC17.44■□□□□ 0.38
CHMP2AO43633 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC17.44■□□□□ 0.38
CHMP2AO43633 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP2AO43633 MBP-202ENST00000355994 2772 ntTSL 5 BASIC17.44■□□□□ 0.38
CHMP2AO43633 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
CHMP2AO43633 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CHMP2AO43633 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP2AO43633 AC087481.3-201ENST00000602886 1894 ntBASIC17.44■□□□□ 0.38
CHMP2AO43633 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP2AO43633 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.43■□□□□ 0.38
CHMP2AO43633 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
CHMP2AO43633 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP2AO43633 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP2AO43633 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP2AO43633 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP2AO43633 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CHMP2AO43633 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.43■□□□□ 0.38
CHMP2AO43633 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP2AO43633 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
CHMP2AO43633 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP2AO43633 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP2AO43633 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC17.43■□□□□ 0.38
CHMP2AO43633 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP2AO43633 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC17.43■□□□□ 0.38
CHMP2AO43633 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC17.43■□□□□ 0.38
CHMP2AO43633 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC17.43■□□□□ 0.38
CHMP2AO43633 NID2-208ENST00000617139 3827 ntTSL 5 BASIC17.43■□□□□ 0.38
CHMP2AO43633 GPR39-203ENST00000622084 900 ntTSL 5 BASIC17.43■□□□□ 0.38
CHMP2AO43633 RPSAP52-203ENST00000622976 1023 ntBASIC17.43■□□□□ 0.38
CHMP2AO43633 ABBA01031660.1-201ENST00000635219 756 ntBASIC17.43■□□□□ 0.38
CHMP2AO43633 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CHMP2AO43633 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP2AO43633 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP2AO43633 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP2AO43633 AC020658.6-201ENST00000623564 1870 ntBASIC17.43■□□□□ 0.38
CHMP2AO43633 API5-202ENST00000420461 2009 ntTSL 2 BASIC17.43■□□□□ 0.38
CHMP2AO43633 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC17.43■□□□□ 0.38
CHMP2AO43633 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CHMP2AO43633 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP2AO43633 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CHMP2AO43633 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP2AO43633 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.43■□□□□ 0.38
CHMP2AO43633 AC067930.6-201ENST00000623257 4947 ntBASIC17.43■□□□□ 0.38
CHMP2AO43633 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms