Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.62■□□□□ 0.09
TRIM49D1C9J1S8 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 AC069335.1-201ENST00000489972 472 ntBASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 CAND2-206ENST00000626378 333 ntTSL 5 BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM49D1C9J1S8 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 AC084121.4-201ENST00000641598 221 ntBASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 AF228730.8-201ENST00000642140 221 ntBASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 AC117489.1-201ENST00000625169 3217 ntBASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM49D1C9J1S8 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 REXO1L2P-201ENST00000425429 2069 ntBASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms