Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC30.47■■■□□ 2.47
TRIM35Q9UPQ4 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC30.47■■■□□ 2.47
TRIM35Q9UPQ4 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
TRIM35Q9UPQ4 GUSBP5-201ENST00000418136 578 ntBASIC30.47■■■□□ 2.47
TRIM35Q9UPQ4 BX664725.1-201ENST00000438252 379 ntBASIC30.47■■■□□ 2.47
TRIM35Q9UPQ4 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC30.47■■■□□ 2.47
TRIM35Q9UPQ4 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
TRIM35Q9UPQ4 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
TRIM35Q9UPQ4 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC30.46■■■□□ 2.47
TRIM35Q9UPQ4 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC30.46■■■□□ 2.47
TRIM35Q9UPQ4 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC30.46■■■□□ 2.47
TRIM35Q9UPQ4 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC30.45■■■□□ 2.47
TRIM35Q9UPQ4 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
TRIM35Q9UPQ4 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC30.45■■■□□ 2.47
TRIM35Q9UPQ4 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
TRIM35Q9UPQ4 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
TRIM35Q9UPQ4 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC30.44■■■□□ 2.46
TRIM35Q9UPQ4 MIR4787-201ENST00000607364 84 ntBASIC30.44■■■□□ 2.46
TRIM35Q9UPQ4 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC30.44■■■□□ 2.46
TRIM35Q9UPQ4 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC30.44■■■□□ 2.46
TRIM35Q9UPQ4 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
TRIM35Q9UPQ4 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC30.43■■■□□ 2.46
TRIM35Q9UPQ4 CREM-229ENST00000474362 1030 ntTSL 2 BASIC30.43■■■□□ 2.46
TRIM35Q9UPQ4 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC30.43■■■□□ 2.46
TRIM35Q9UPQ4 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC30.43■■■□□ 2.46
TRIM35Q9UPQ4 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC30.42■■■□□ 2.46
TRIM35Q9UPQ4 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
TRIM35Q9UPQ4 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC30.42■■■□□ 2.46
TRIM35Q9UPQ4 LBH-205ENST00000407930 756 ntTSL 2 BASIC30.42■■■□□ 2.46
TRIM35Q9UPQ4 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
TRIM35Q9UPQ4 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC30.42■■■□□ 2.46
TRIM35Q9UPQ4 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
TRIM35Q9UPQ4 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC30.41■■■□□ 2.46
TRIM35Q9UPQ4 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC30.41■■■□□ 2.46
TRIM35Q9UPQ4 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC30.41■■■□□ 2.46
TRIM35Q9UPQ4 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC30.41■■■□□ 2.46
TRIM35Q9UPQ4 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
TRIM35Q9UPQ4 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
TRIM35Q9UPQ4 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC30.4■■■□□ 2.46
TRIM35Q9UPQ4 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
TRIM35Q9UPQ4 AC135731.1-201ENST00000569415 2548 ntBASIC30.4■■■□□ 2.46
TRIM35Q9UPQ4 TMEM202-AS1-202ENST00000565181 2325 ntBASIC30.4■■■□□ 2.46
TRIM35Q9UPQ4 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
TRIM35Q9UPQ4 TK2-202ENST00000417693 1046 ntTSL 2 BASIC30.4■■■□□ 2.46
TRIM35Q9UPQ4 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC30.4■■■□□ 2.46
TRIM35Q9UPQ4 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
TRIM35Q9UPQ4 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC30.39■■■□□ 2.46
TRIM35Q9UPQ4 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC30.39■■■□□ 2.46
TRIM35Q9UPQ4 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
TRIM35Q9UPQ4 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
TRIM35Q9UPQ4 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
TRIM35Q9UPQ4 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
TRIM35Q9UPQ4 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC30.39■■■□□ 2.46
TRIM35Q9UPQ4 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC30.39■■■□□ 2.46
TRIM35Q9UPQ4 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC30.39■■■□□ 2.46
TRIM35Q9UPQ4 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC30.39■■■□□ 2.46
TRIM35Q9UPQ4 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC30.39■■■□□ 2.46
TRIM35Q9UPQ4 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
TRIM35Q9UPQ4 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC30.38■■■□□ 2.45
TRIM35Q9UPQ4 AC131274.2-201ENST00000580697 1507 ntBASIC30.38■■■□□ 2.45
TRIM35Q9UPQ4 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
TRIM35Q9UPQ4 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC30.38■■■□□ 2.45
TRIM35Q9UPQ4 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
TRIM35Q9UPQ4 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC30.38■■■□□ 2.45
TRIM35Q9UPQ4 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC30.38■■■□□ 2.45
TRIM35Q9UPQ4 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC30.38■■■□□ 2.45
TRIM35Q9UPQ4 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC30.37■■■□□ 2.45
TRIM35Q9UPQ4 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
TRIM35Q9UPQ4 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC30.37■■■□□ 2.45
TRIM35Q9UPQ4 KRT125P-201ENST00000546827 989 ntBASIC30.37■■■□□ 2.45
TRIM35Q9UPQ4 AC092028.1-203ENST00000608262 953 ntBASIC30.37■■■□□ 2.45
TRIM35Q9UPQ4 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
TRIM35Q9UPQ4 UNC93B8-201ENST00000511903 705 ntBASIC30.36■■■□□ 2.45
TRIM35Q9UPQ4 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
TRIM35Q9UPQ4 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC30.36■■■□□ 2.45
TRIM35Q9UPQ4 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC30.36■■■□□ 2.45
TRIM35Q9UPQ4 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC30.35■■■□□ 2.45
TRIM35Q9UPQ4 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC30.35■■■□□ 2.45
TRIM35Q9UPQ4 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
TRIM35Q9UPQ4 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC30.35■■■□□ 2.45
TRIM35Q9UPQ4 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
TRIM35Q9UPQ4 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
TRIM35Q9UPQ4 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC30.34■■■□□ 2.45
TRIM35Q9UPQ4 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
TRIM35Q9UPQ4 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
TRIM35Q9UPQ4 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
TRIM35Q9UPQ4 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
TRIM35Q9UPQ4 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC30.33■■■□□ 2.45
TRIM35Q9UPQ4 SNX5-217ENST00000606557 1087 ntBASIC30.33■■■□□ 2.45
TRIM35Q9UPQ4 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC30.33■■■□□ 2.45
TRIM35Q9UPQ4 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC30.32■■■□□ 2.44
TRIM35Q9UPQ4 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC30.32■■■□□ 2.44
TRIM35Q9UPQ4 AL139125.2-201ENST00000623134 1869 ntBASIC30.32■■■□□ 2.44
TRIM35Q9UPQ4 EED-207ENST00000528180 1745 ntTSL 5 BASIC30.32■■■□□ 2.44
TRIM35Q9UPQ4 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
TRIM35Q9UPQ4 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC30.31■■■□□ 2.44
TRIM35Q9UPQ4 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC30.31■■■□□ 2.44
TRIM35Q9UPQ4 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC30.31■■■□□ 2.44
TRIM35Q9UPQ4 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
TRIM35Q9UPQ4 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms