Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
NOTCH3Q9UM47 PBX2P1-201ENST00000493219 1291 ntBASIC17.8■□□□□ 0.44
NOTCH3Q9UM47 SNX5-217ENST00000606557 1087 ntBASIC17.8■□□□□ 0.44
NOTCH3Q9UM47 AC087623.3-201ENST00000607047 1098 ntBASIC17.8■□□□□ 0.44
NOTCH3Q9UM47 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NOTCH3Q9UM47 AC135279.3-201ENST00000610945 1311 ntBASIC17.79■□□□□ 0.44
NOTCH3Q9UM47 HYI-206ENST00000372434 1025 ntTSL 5 BASIC17.79■□□□□ 0.44
NOTCH3Q9UM47 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC17.79■□□□□ 0.44
NOTCH3Q9UM47 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NOTCH3Q9UM47 AC092666.2-201ENST00000613287 246 ntBASIC17.79■□□□□ 0.44
NOTCH3Q9UM47 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC17.79■□□□□ 0.44
NOTCH3Q9UM47 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
NOTCH3Q9UM47 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
NOTCH3Q9UM47 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NOTCH3Q9UM47 MIR5787-201ENST00000611784 55 ntBASIC17.78■□□□□ 0.44
NOTCH3Q9UM47 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC17.78■□□□□ 0.44
NOTCH3Q9UM47 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
NOTCH3Q9UM47 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NOTCH3Q9UM47 EDA-201ENST00000338901 1233 ntBASIC17.78■□□□□ 0.44
NOTCH3Q9UM47 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NOTCH3Q9UM47 CLTA-206ENST00000466396 695 ntTSL 2 BASIC17.78■□□□□ 0.44
NOTCH3Q9UM47 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC17.78■□□□□ 0.44
NOTCH3Q9UM47 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC17.78■□□□□ 0.44
NOTCH3Q9UM47 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC17.78■□□□□ 0.44
NOTCH3Q9UM47 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
NOTCH3Q9UM47 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NOTCH3Q9UM47 AC024257.2-201ENST00000549699 147 ntBASIC17.77■□□□□ 0.44
NOTCH3Q9UM47 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
NOTCH3Q9UM47 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC17.77■□□□□ 0.43
NOTCH3Q9UM47 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
NOTCH3Q9UM47 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.43
NOTCH3Q9UM47 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC17.77■□□□□ 0.43
NOTCH3Q9UM47 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
NOTCH3Q9UM47 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NOTCH3Q9UM47 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC17.76■□□□□ 0.43
NOTCH3Q9UM47 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
NOTCH3Q9UM47 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
NOTCH3Q9UM47 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NOTCH3Q9UM47 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NOTCH3Q9UM47 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC17.76■□□□□ 0.43
NOTCH3Q9UM47 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
NOTCH3Q9UM47 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NOTCH3Q9UM47 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
NOTCH3Q9UM47 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
NOTCH3Q9UM47 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
NOTCH3Q9UM47 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
NOTCH3Q9UM47 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NOTCH3Q9UM47 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NOTCH3Q9UM47 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC17.75■□□□□ 0.43
NOTCH3Q9UM47 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC17.75■□□□□ 0.43
NOTCH3Q9UM47 ERN1-208ENST00000606895 2068 ntBASIC17.75■□□□□ 0.43
NOTCH3Q9UM47 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NOTCH3Q9UM47 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NOTCH3Q9UM47 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NOTCH3Q9UM47 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NOTCH3Q9UM47 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NOTCH3Q9UM47 PTMA-205ENST00000410064 814 ntTSL 2 BASIC17.75■□□□□ 0.43
NOTCH3Q9UM47 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC17.74■□□□□ 0.43
NOTCH3Q9UM47 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC17.74■□□□□ 0.43
NOTCH3Q9UM47 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC17.74■□□□□ 0.43
NOTCH3Q9UM47 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NOTCH3Q9UM47 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC17.74■□□□□ 0.43
NOTCH3Q9UM47 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NOTCH3Q9UM47 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NOTCH3Q9UM47 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC17.73■□□□□ 0.43
NOTCH3Q9UM47 AL355001.2-201ENST00000620617 1191 ntBASIC17.73■□□□□ 0.43
NOTCH3Q9UM47 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NOTCH3Q9UM47 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
NOTCH3Q9UM47 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
NOTCH3Q9UM47 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NOTCH3Q9UM47 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NOTCH3Q9UM47 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NOTCH3Q9UM47 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
NOTCH3Q9UM47 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC17.73■□□□□ 0.43
NOTCH3Q9UM47 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC17.73■□□□□ 0.43
NOTCH3Q9UM47 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC17.73■□□□□ 0.43
NOTCH3Q9UM47 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NOTCH3Q9UM47 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NOTCH3Q9UM47 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC17.73■□□□□ 0.43
NOTCH3Q9UM47 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
NOTCH3Q9UM47 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
NOTCH3Q9UM47 AL121749.1-202ENST00000609313 2153 ntBASIC17.72■□□□□ 0.43
NOTCH3Q9UM47 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
NOTCH3Q9UM47 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
NOTCH3Q9UM47 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC17.72■□□□□ 0.43
NOTCH3Q9UM47 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
NOTCH3Q9UM47 AC104564.3-201ENST00000582367 638 ntBASIC17.72■□□□□ 0.43
NOTCH3Q9UM47 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
NOTCH3Q9UM47 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
NOTCH3Q9UM47 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
NOTCH3Q9UM47 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NOTCH3Q9UM47 FOXO3B-201ENST00000395675 1928 ntBASIC17.71■□□□□ 0.43
NOTCH3Q9UM47 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NOTCH3Q9UM47 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NOTCH3Q9UM47 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC17.71■□□□□ 0.43
NOTCH3Q9UM47 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NOTCH3Q9UM47 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NOTCH3Q9UM47 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC17.71■□□□□ 0.43
NOTCH3Q9UM47 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC17.71■□□□□ 0.43
NOTCH3Q9UM47 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms