Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRFN1Q9P244 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRFN1Q9P244 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.34■■□□□ 1.01
LRFN1Q9P244 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.34■■□□□ 1.01
LRFN1Q9P244 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.34■■□□□ 1.01
LRFN1Q9P244 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRFN1Q9P244 AL356740.2-201ENST00000601559 647 ntBASIC21.34■■□□□ 1.01
LRFN1Q9P244 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
LRFN1Q9P244 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1.01
LRFN1Q9P244 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LRFN1Q9P244 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.33■■□□□ 1.01
LRFN1Q9P244 SNX5-217ENST00000606557 1087 ntBASIC21.33■■□□□ 1.01
LRFN1Q9P244 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LRFN1Q9P244 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LRFN1Q9P244 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
LRFN1Q9P244 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
LRFN1Q9P244 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.32■■□□□ 1
LRFN1Q9P244 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.32■■□□□ 1
LRFN1Q9P244 MIR3621-201ENST00000580529 85 ntBASIC21.32■■□□□ 1
LRFN1Q9P244 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
LRFN1Q9P244 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
LRFN1Q9P244 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.32■■□□□ 1
LRFN1Q9P244 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.31■■□□□ 1
LRFN1Q9P244 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
LRFN1Q9P244 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.31■■□□□ 1
LRFN1Q9P244 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.31■■□□□ 1
LRFN1Q9P244 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.31■■□□□ 1
LRFN1Q9P244 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC21.31■■□□□ 1
LRFN1Q9P244 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC21.3■■□□□ 1
LRFN1Q9P244 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.3■■□□□ 1
LRFN1Q9P244 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.3■■□□□ 1
LRFN1Q9P244 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.3■■□□□ 1
LRFN1Q9P244 AC131281.2-201ENST00000520478 145 ntBASIC21.3■■□□□ 1
LRFN1Q9P244 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC21.3■■□□□ 1
LRFN1Q9P244 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.3■■□□□ 1
LRFN1Q9P244 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.3■■□□□ 1
LRFN1Q9P244 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
LRFN1Q9P244 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LRFN1Q9P244 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.29■■□□□ 1
LRFN1Q9P244 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LRFN1Q9P244 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.29■■□□□ 1
LRFN1Q9P244 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LRFN1Q9P244 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LRFN1Q9P244 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
LRFN1Q9P244 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
LRFN1Q9P244 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.29■■□□□ 1
LRFN1Q9P244 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
LRFN1Q9P244 MIR6722-201ENST00000617286 78 ntBASIC21.29■■□□□ 1
LRFN1Q9P244 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.29■■□□□ 1
LRFN1Q9P244 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.29■■□□□ 1
LRFN1Q9P244 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LRFN1Q9P244 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC21.28■■□□□ 1
LRFN1Q9P244 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC21.28■■□□□ 1
LRFN1Q9P244 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.28■■□□□ 1
LRFN1Q9P244 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
LRFN1Q9P244 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LRFN1Q9P244 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.28■■□□□ 1
LRFN1Q9P244 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.27■■□□□ 1
LRFN1Q9P244 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.27■■□□□ 1
LRFN1Q9P244 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
LRFN1Q9P244 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.27■■□□□ 1
LRFN1Q9P244 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.27■■□□□ 1
LRFN1Q9P244 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
LRFN1Q9P244 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
LRFN1Q9P244 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.27■■□□□ 1
LRFN1Q9P244 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.27■■□□□ 1
LRFN1Q9P244 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC21.26■□□□□ 0.99
LRFN1Q9P244 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRFN1Q9P244 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.26■□□□□ 0.99
LRFN1Q9P244 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.26■□□□□ 0.99
LRFN1Q9P244 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.26■□□□□ 0.99
LRFN1Q9P244 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRFN1Q9P244 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
LRFN1Q9P244 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC21.26■□□□□ 0.99
LRFN1Q9P244 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
LRFN1Q9P244 AL136116.3-201ENST00000402907 1138 ntBASIC21.25■□□□□ 0.99
LRFN1Q9P244 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.25■□□□□ 0.99
LRFN1Q9P244 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
LRFN1Q9P244 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.25■□□□□ 0.99
LRFN1Q9P244 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.25■□□□□ 0.99
LRFN1Q9P244 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LRFN1Q9P244 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.24■□□□□ 0.99
LRFN1Q9P244 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LRFN1Q9P244 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.24■□□□□ 0.99
LRFN1Q9P244 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LRFN1Q9P244 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LRFN1Q9P244 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LRFN1Q9P244 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LRFN1Q9P244 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.24■□□□□ 0.99
LRFN1Q9P244 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LRFN1Q9P244 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.24■□□□□ 0.99
LRFN1Q9P244 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LRFN1Q9P244 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LRFN1Q9P244 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LRFN1Q9P244 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LRFN1Q9P244 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
LRFN1Q9P244 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
LRFN1Q9P244 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
LRFN1Q9P244 AC004448.1-201ENST00000458332 883 ntBASIC21.23■□□□□ 0.99
LRFN1Q9P244 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms