Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CUEDC1Q9NWM3 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CUEDC1Q9NWM3 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
CUEDC1Q9NWM3 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
CUEDC1Q9NWM3 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC22.44■■□□□ 1.18
CUEDC1Q9NWM3 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CUEDC1Q9NWM3 MIR4281-201ENST00000580852 62 ntBASIC22.44■■□□□ 1.18
CUEDC1Q9NWM3 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC22.44■■□□□ 1.18
CUEDC1Q9NWM3 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
CUEDC1Q9NWM3 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
CUEDC1Q9NWM3 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CUEDC1Q9NWM3 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC22.43■■□□□ 1.18
CUEDC1Q9NWM3 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC22.43■■□□□ 1.18
CUEDC1Q9NWM3 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
CUEDC1Q9NWM3 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CUEDC1Q9NWM3 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC22.43■■□□□ 1.18
CUEDC1Q9NWM3 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CUEDC1Q9NWM3 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CUEDC1Q9NWM3 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CUEDC1Q9NWM3 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC22.42■■□□□ 1.18
CUEDC1Q9NWM3 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CUEDC1Q9NWM3 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CUEDC1Q9NWM3 MIR935-201ENST00000401179 91 ntBASIC22.42■■□□□ 1.18
CUEDC1Q9NWM3 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CUEDC1Q9NWM3 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CUEDC1Q9NWM3 HLA-L-211ENST00000482052 1765 ntBASIC22.42■■□□□ 1.18
CUEDC1Q9NWM3 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC22.42■■□□□ 1.18
CUEDC1Q9NWM3 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CUEDC1Q9NWM3 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CUEDC1Q9NWM3 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CUEDC1Q9NWM3 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC22.41■■□□□ 1.18
CUEDC1Q9NWM3 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CUEDC1Q9NWM3 OR2A1-AS1-204ENST00000470435 602 ntBASIC22.41■■□□□ 1.18
CUEDC1Q9NWM3 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CUEDC1Q9NWM3 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC22.41■■□□□ 1.18
CUEDC1Q9NWM3 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CUEDC1Q9NWM3 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CUEDC1Q9NWM3 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC22.4■■□□□ 1.18
CUEDC1Q9NWM3 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
CUEDC1Q9NWM3 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CUEDC1Q9NWM3 TK2-216ENST00000564917 1156 ntTSL 3 BASIC22.4■■□□□ 1.18
CUEDC1Q9NWM3 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC22.4■■□□□ 1.18
CUEDC1Q9NWM3 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
CUEDC1Q9NWM3 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CUEDC1Q9NWM3 AL139125.2-201ENST00000623134 1869 ntBASIC22.4■■□□□ 1.18
CUEDC1Q9NWM3 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CUEDC1Q9NWM3 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
CUEDC1Q9NWM3 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC22.39■■□□□ 1.18
CUEDC1Q9NWM3 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
CUEDC1Q9NWM3 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CUEDC1Q9NWM3 TMEM202-AS1-202ENST00000565181 2325 ntBASIC22.39■■□□□ 1.17
CUEDC1Q9NWM3 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC22.39■■□□□ 1.17
CUEDC1Q9NWM3 PRTG-204ENST00000561292 833 ntTSL 3 BASIC22.39■■□□□ 1.17
CUEDC1Q9NWM3 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC22.39■■□□□ 1.17
CUEDC1Q9NWM3 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CUEDC1Q9NWM3 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC22.38■■□□□ 1.17
CUEDC1Q9NWM3 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
CUEDC1Q9NWM3 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC22.38■■□□□ 1.17
CUEDC1Q9NWM3 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CUEDC1Q9NWM3 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CUEDC1Q9NWM3 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CUEDC1Q9NWM3 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
CUEDC1Q9NWM3 EED-207ENST00000528180 1745 ntTSL 5 BASIC22.37■■□□□ 1.17
CUEDC1Q9NWM3 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
CUEDC1Q9NWM3 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC22.36■■□□□ 1.17
CUEDC1Q9NWM3 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
CUEDC1Q9NWM3 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
CUEDC1Q9NWM3 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CUEDC1Q9NWM3 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC22.36■■□□□ 1.17
CUEDC1Q9NWM3 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
CUEDC1Q9NWM3 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC22.35■■□□□ 1.17
CUEDC1Q9NWM3 AF131216.4-201ENST00000638924 1588 ntBASIC22.35■■□□□ 1.17
CUEDC1Q9NWM3 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
CUEDC1Q9NWM3 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CUEDC1Q9NWM3 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CUEDC1Q9NWM3 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC22.35■■□□□ 1.17
CUEDC1Q9NWM3 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC22.35■■□□□ 1.17
CUEDC1Q9NWM3 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CUEDC1Q9NWM3 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC22.35■■□□□ 1.17
CUEDC1Q9NWM3 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CUEDC1Q9NWM3 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC22.34■■□□□ 1.17
CUEDC1Q9NWM3 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC22.34■■□□□ 1.17
CUEDC1Q9NWM3 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
CUEDC1Q9NWM3 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC22.34■■□□□ 1.17
CUEDC1Q9NWM3 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CUEDC1Q9NWM3 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CUEDC1Q9NWM3 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
CUEDC1Q9NWM3 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CUEDC1Q9NWM3 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CUEDC1Q9NWM3 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CUEDC1Q9NWM3 LINC01124-201ENST00000409786 2117 ntBASIC22.33■■□□□ 1.17
CUEDC1Q9NWM3 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC22.33■■□□□ 1.17
CUEDC1Q9NWM3 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CUEDC1Q9NWM3 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC22.33■■□□□ 1.17
CUEDC1Q9NWM3 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.16
CUEDC1Q9NWM3 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC22.33■■□□□ 1.16
CUEDC1Q9NWM3 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC22.33■■□□□ 1.16
CUEDC1Q9NWM3 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
CUEDC1Q9NWM3 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
CUEDC1Q9NWM3 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms