Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC30.62■■■□□ 2.49
SHANK3Q9BYB0 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC30.62■■■□□ 2.49
SHANK3Q9BYB0 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC30.62■■■□□ 2.49
SHANK3Q9BYB0 PTMA-205ENST00000410064 814 ntTSL 2 BASIC30.62■■■□□ 2.49
SHANK3Q9BYB0 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
SHANK3Q9BYB0 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC30.61■■■□□ 2.49
SHANK3Q9BYB0 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
SHANK3Q9BYB0 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC30.61■■■□□ 2.49
SHANK3Q9BYB0 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
SHANK3Q9BYB0 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC30.61■■■□□ 2.49
SHANK3Q9BYB0 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC30.6■■■□□ 2.49
SHANK3Q9BYB0 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC30.6■■■□□ 2.49
SHANK3Q9BYB0 AC131274.2-201ENST00000580697 1507 ntBASIC30.6■■■□□ 2.49
SHANK3Q9BYB0 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC30.6■■■□□ 2.49
SHANK3Q9BYB0 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC30.6■■■□□ 2.49
SHANK3Q9BYB0 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC30.6■■■□□ 2.49
SHANK3Q9BYB0 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC30.6■■■□□ 2.49
SHANK3Q9BYB0 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC30.59■■■□□ 2.49
SHANK3Q9BYB0 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC30.59■■■□□ 2.49
SHANK3Q9BYB0 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
SHANK3Q9BYB0 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
SHANK3Q9BYB0 AC004448.1-201ENST00000458332 883 ntBASIC30.59■■■□□ 2.49
SHANK3Q9BYB0 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
SHANK3Q9BYB0 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC30.58■■■□□ 2.49
SHANK3Q9BYB0 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
SHANK3Q9BYB0 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
SHANK3Q9BYB0 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
SHANK3Q9BYB0 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
SHANK3Q9BYB0 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC30.58■■■□□ 2.49
SHANK3Q9BYB0 GRAMD4P4-201ENST00000613563 1115 ntBASIC30.58■■■□□ 2.49
SHANK3Q9BYB0 AC010501.1-201ENST00000606270 1962 ntBASIC30.57■■■□□ 2.48
SHANK3Q9BYB0 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
SHANK3Q9BYB0 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
SHANK3Q9BYB0 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
SHANK3Q9BYB0 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC30.57■■■□□ 2.48
SHANK3Q9BYB0 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC30.57■■■□□ 2.48
SHANK3Q9BYB0 SRD5A1P1-201ENST00000442297 786 ntBASIC30.56■■■□□ 2.48
SHANK3Q9BYB0 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC30.56■■■□□ 2.48
SHANK3Q9BYB0 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
SHANK3Q9BYB0 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC30.56■■■□□ 2.48
SHANK3Q9BYB0 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
SHANK3Q9BYB0 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
SHANK3Q9BYB0 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC30.55■■■□□ 2.48
SHANK3Q9BYB0 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC30.55■■■□□ 2.48
SHANK3Q9BYB0 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC30.55■■■□□ 2.48
SHANK3Q9BYB0 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC30.54■■■□□ 2.48
SHANK3Q9BYB0 AL136967.2-201ENST00000623968 743 ntBASIC30.54■■■□□ 2.48
SHANK3Q9BYB0 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC30.54■■■□□ 2.48
SHANK3Q9BYB0 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
SHANK3Q9BYB0 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
SHANK3Q9BYB0 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC30.53■■■□□ 2.48
SHANK3Q9BYB0 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
SHANK3Q9BYB0 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC30.53■■■□□ 2.48
SHANK3Q9BYB0 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
SHANK3Q9BYB0 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
SHANK3Q9BYB0 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC30.53■■■□□ 2.48
SHANK3Q9BYB0 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
SHANK3Q9BYB0 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC30.52■■■□□ 2.48
SHANK3Q9BYB0 PTCHD3P2-201ENST00000424937 1205 ntBASIC30.52■■■□□ 2.48
SHANK3Q9BYB0 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC30.52■■■□□ 2.48
SHANK3Q9BYB0 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC30.52■■■□□ 2.48
SHANK3Q9BYB0 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
SHANK3Q9BYB0 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
SHANK3Q9BYB0 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC30.51■■■□□ 2.48
SHANK3Q9BYB0 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
SHANK3Q9BYB0 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC30.51■■■□□ 2.47
SHANK3Q9BYB0 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC30.51■■■□□ 2.47
SHANK3Q9BYB0 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC30.51■■■□□ 2.47
SHANK3Q9BYB0 AL355001.2-201ENST00000620617 1191 ntBASIC30.51■■■□□ 2.47
SHANK3Q9BYB0 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC30.5■■■□□ 2.47
SHANK3Q9BYB0 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
SHANK3Q9BYB0 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
SHANK3Q9BYB0 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
SHANK3Q9BYB0 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC30.5■■■□□ 2.47
SHANK3Q9BYB0 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
SHANK3Q9BYB0 MIR5787-201ENST00000611784 55 ntBASIC30.5■■■□□ 2.47
SHANK3Q9BYB0 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
SHANK3Q9BYB0 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC30.5■■■□□ 2.47
SHANK3Q9BYB0 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC30.5■■■□□ 2.47
SHANK3Q9BYB0 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC30.49■■■□□ 2.47
SHANK3Q9BYB0 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
SHANK3Q9BYB0 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC30.49■■■□□ 2.47
SHANK3Q9BYB0 SHF-206ENST00000560471 2499 ntTSL 5 BASIC30.49■■■□□ 2.47
SHANK3Q9BYB0 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC30.48■■■□□ 2.47
SHANK3Q9BYB0 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
SHANK3Q9BYB0 MIR4767-201ENST00000582827 78 ntBASIC30.48■■■□□ 2.47
SHANK3Q9BYB0 PKM-203ENST00000389093 2279 ntTSL 5 BASIC30.48■■■□□ 2.47
SHANK3Q9BYB0 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC30.48■■■□□ 2.47
SHANK3Q9BYB0 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
SHANK3Q9BYB0 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
SHANK3Q9BYB0 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
SHANK3Q9BYB0 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
SHANK3Q9BYB0 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC30.47■■■□□ 2.47
SHANK3Q9BYB0 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
SHANK3Q9BYB0 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC30.47■■■□□ 2.47
SHANK3Q9BYB0 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
SHANK3Q9BYB0 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC30.47■■■□□ 2.47
SHANK3Q9BYB0 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
SHANK3Q9BYB0 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
SHANK3Q9BYB0 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC30.46■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 7.3 ms