Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
HMGB4Q8WW32 SRD5A1P1-201ENST00000442297 786 ntBASIC23.43■■□□□ 1.34
HMGB4Q8WW32 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC23.43■■□□□ 1.34
HMGB4Q8WW32 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC23.43■■□□□ 1.34
HMGB4Q8WW32 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.43■■□□□ 1.34
HMGB4Q8WW32 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
HMGB4Q8WW32 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
HMGB4Q8WW32 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
HMGB4Q8WW32 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
HMGB4Q8WW32 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
HMGB4Q8WW32 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC23.42■■□□□ 1.34
HMGB4Q8WW32 AL136162.1-201ENST00000607711 1078 ntBASIC23.42■■□□□ 1.34
HMGB4Q8WW32 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
HMGB4Q8WW32 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23.41■■□□□ 1.34
HMGB4Q8WW32 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC23.41■■□□□ 1.34
HMGB4Q8WW32 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC23.41■■□□□ 1.34
HMGB4Q8WW32 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
HMGB4Q8WW32 AC010501.1-201ENST00000606270 1962 ntBASIC23.41■■□□□ 1.34
HMGB4Q8WW32 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
HMGB4Q8WW32 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
HMGB4Q8WW32 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
HMGB4Q8WW32 ZNRF2P3-201ENST00000424200 374 ntBASIC23.4■■□□□ 1.34
HMGB4Q8WW32 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC23.4■■□□□ 1.34
HMGB4Q8WW32 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
HMGB4Q8WW32 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC23.39■■□□□ 1.33
HMGB4Q8WW32 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
HMGB4Q8WW32 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.33
HMGB4Q8WW32 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
HMGB4Q8WW32 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.39■■□□□ 1.33
HMGB4Q8WW32 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
HMGB4Q8WW32 AC135279.3-201ENST00000610945 1311 ntBASIC23.38■■□□□ 1.33
HMGB4Q8WW32 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.38■■□□□ 1.33
HMGB4Q8WW32 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC23.38■■□□□ 1.33
HMGB4Q8WW32 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC23.38■■□□□ 1.33
HMGB4Q8WW32 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
HMGB4Q8WW32 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
HMGB4Q8WW32 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.38■■□□□ 1.33
HMGB4Q8WW32 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
HMGB4Q8WW32 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
HMGB4Q8WW32 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
HMGB4Q8WW32 AC004448.1-201ENST00000458332 883 ntBASIC23.37■■□□□ 1.33
HMGB4Q8WW32 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC23.37■■□□□ 1.33
HMGB4Q8WW32 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC23.37■■□□□ 1.33
HMGB4Q8WW32 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC23.37■■□□□ 1.33
HMGB4Q8WW32 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
HMGB4Q8WW32 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
HMGB4Q8WW32 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
HMGB4Q8WW32 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC23.36■■□□□ 1.33
HMGB4Q8WW32 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
HMGB4Q8WW32 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC23.36■■□□□ 1.33
HMGB4Q8WW32 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
HMGB4Q8WW32 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
HMGB4Q8WW32 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC23.35■■□□□ 1.33
HMGB4Q8WW32 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
HMGB4Q8WW32 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC23.35■■□□□ 1.33
HMGB4Q8WW32 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
HMGB4Q8WW32 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
HMGB4Q8WW32 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
HMGB4Q8WW32 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
HMGB4Q8WW32 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
HMGB4Q8WW32 AC024257.2-201ENST00000549699 147 ntBASIC23.34■■□□□ 1.33
HMGB4Q8WW32 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
HMGB4Q8WW32 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
HMGB4Q8WW32 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
HMGB4Q8WW32 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
HMGB4Q8WW32 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
HMGB4Q8WW32 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
HMGB4Q8WW32 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC23.33■■□□□ 1.33
HMGB4Q8WW32 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC23.33■■□□□ 1.33
HMGB4Q8WW32 AL031432.3-201ENST00000607698 485 ntBASIC23.33■■□□□ 1.33
HMGB4Q8WW32 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
HMGB4Q8WW32 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.32
HMGB4Q8WW32 AC005703.6-201ENST00000623265 1329 ntBASIC23.33■■□□□ 1.32
HMGB4Q8WW32 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
HMGB4Q8WW32 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
HMGB4Q8WW32 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
HMGB4Q8WW32 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
HMGB4Q8WW32 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC23.32■■□□□ 1.32
HMGB4Q8WW32 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
HMGB4Q8WW32 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
HMGB4Q8WW32 GATM-206ENST00000558336 1522 ntTSL 2 BASIC23.32■■□□□ 1.32
HMGB4Q8WW32 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
HMGB4Q8WW32 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HMGB4Q8WW32 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.31■■□□□ 1.32
HMGB4Q8WW32 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
HMGB4Q8WW32 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
HMGB4Q8WW32 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
HMGB4Q8WW32 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HMGB4Q8WW32 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HMGB4Q8WW32 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
HMGB4Q8WW32 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
HMGB4Q8WW32 SUDS3P1-201ENST00000505831 966 ntBASIC23.31■■□□□ 1.32
HMGB4Q8WW32 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC23.31■■□□□ 1.32
HMGB4Q8WW32 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC23.31■■□□□ 1.32
HMGB4Q8WW32 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC23.31■■□□□ 1.32
HMGB4Q8WW32 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC23.31■■□□□ 1.32
HMGB4Q8WW32 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
HMGB4Q8WW32 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HMGB4Q8WW32 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
HMGB4Q8WW32 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms