Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
USP54Q70EL1 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
USP54Q70EL1 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
USP54Q70EL1 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC31.52■■■□□ 2.64
USP54Q70EL1 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
USP54Q70EL1 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC31.51■■■□□ 2.64
USP54Q70EL1 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC31.51■■■□□ 2.64
USP54Q70EL1 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
USP54Q70EL1 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC31.51■■■□□ 2.63
USP54Q70EL1 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
USP54Q70EL1 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC31.51■■■□□ 2.63
USP54Q70EL1 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
USP54Q70EL1 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC31.5■■■□□ 2.63
USP54Q70EL1 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC31.5■■■□□ 2.63
USP54Q70EL1 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
USP54Q70EL1 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
USP54Q70EL1 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC31.5■■■□□ 2.63
USP54Q70EL1 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
USP54Q70EL1 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC31.5■■■□□ 2.63
USP54Q70EL1 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC31.5■■■□□ 2.63
USP54Q70EL1 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC31.5■■■□□ 2.63
USP54Q70EL1 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC31.49■■■□□ 2.63
USP54Q70EL1 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC31.49■■■□□ 2.63
USP54Q70EL1 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC31.49■■■□□ 2.63
USP54Q70EL1 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC31.49■■■□□ 2.63
USP54Q70EL1 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
USP54Q70EL1 GUK1-205ENST00000366722 850 ntTSL 3 BASIC31.48■■■□□ 2.63
USP54Q70EL1 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
USP54Q70EL1 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
USP54Q70EL1 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC31.47■■■□□ 2.63
USP54Q70EL1 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC31.47■■■□□ 2.63
USP54Q70EL1 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
USP54Q70EL1 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC31.46■■■□□ 2.63
USP54Q70EL1 RARRES2P6-201ENST00000567333 442 ntBASIC31.46■■■□□ 2.63
USP54Q70EL1 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
USP54Q70EL1 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
USP54Q70EL1 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC31.46■■■□□ 2.63
USP54Q70EL1 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
USP54Q70EL1 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC31.45■■■□□ 2.63
USP54Q70EL1 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC31.45■■■□□ 2.63
USP54Q70EL1 ZNRF2P3-201ENST00000424200 374 ntBASIC31.44■■■□□ 2.62
USP54Q70EL1 AC005837.3-201ENST00000612163 286 ntBASIC31.44■■■□□ 2.62
USP54Q70EL1 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC31.44■■■□□ 2.62
USP54Q70EL1 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
USP54Q70EL1 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
USP54Q70EL1 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
USP54Q70EL1 SF1-220ENST00000626028 704 ntTSL 2 BASIC31.44■■■□□ 2.62
USP54Q70EL1 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC31.43■■■□□ 2.62
USP54Q70EL1 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
USP54Q70EL1 GATM-206ENST00000558336 1522 ntTSL 2 BASIC31.43■■■□□ 2.62
USP54Q70EL1 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC31.42■■■□□ 2.62
USP54Q70EL1 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
USP54Q70EL1 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC31.42■■■□□ 2.62
USP54Q70EL1 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC31.42■■■□□ 2.62
USP54Q70EL1 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC31.42■■■□□ 2.62
USP54Q70EL1 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
USP54Q70EL1 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC31.41■■■□□ 2.62
USP54Q70EL1 AL121749.1-202ENST00000609313 2153 ntBASIC31.41■■■□□ 2.62
USP54Q70EL1 AC135279.3-201ENST00000610945 1311 ntBASIC31.41■■■□□ 2.62
USP54Q70EL1 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
USP54Q70EL1 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC31.41■■■□□ 2.62
USP54Q70EL1 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
USP54Q70EL1 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
USP54Q70EL1 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
USP54Q70EL1 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC31.4■■■□□ 2.62
USP54Q70EL1 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC31.4■■■□□ 2.62
USP54Q70EL1 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
USP54Q70EL1 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC31.39■■■□□ 2.62
USP54Q70EL1 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
USP54Q70EL1 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC31.39■■■□□ 2.62
USP54Q70EL1 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC31.39■■■□□ 2.62
USP54Q70EL1 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
USP54Q70EL1 EBPL-204ENST00000378272 766 ntTSL 3 BASIC31.38■■■□□ 2.61
USP54Q70EL1 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC31.38■■■□□ 2.61
USP54Q70EL1 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
USP54Q70EL1 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC31.38■■■□□ 2.61
USP54Q70EL1 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
USP54Q70EL1 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
USP54Q70EL1 DUSP8P4-201ENST00000399538 1761 ntBASIC31.37■■■□□ 2.61
USP54Q70EL1 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
USP54Q70EL1 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC31.37■■■□□ 2.61
USP54Q70EL1 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
USP54Q70EL1 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC31.37■■■□□ 2.61
USP54Q70EL1 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC31.37■■■□□ 2.61
USP54Q70EL1 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC31.37■■■□□ 2.61
USP54Q70EL1 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
USP54Q70EL1 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC31.36■■■□□ 2.61
USP54Q70EL1 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC31.36■■■□□ 2.61
USP54Q70EL1 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC31.36■■■□□ 2.61
USP54Q70EL1 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
USP54Q70EL1 AC024257.2-201ENST00000549699 147 ntBASIC31.36■■■□□ 2.61
USP54Q70EL1 AL136162.1-201ENST00000607711 1078 ntBASIC31.36■■■□□ 2.61
USP54Q70EL1 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC31.36■■■□□ 2.61
USP54Q70EL1 UNC93B3-201ENST00000308076 687 ntBASIC31.35■■■□□ 2.61
USP54Q70EL1 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
USP54Q70EL1 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
USP54Q70EL1 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC31.35■■■□□ 2.61
USP54Q70EL1 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
USP54Q70EL1 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC31.35■■■□□ 2.61
USP54Q70EL1 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC31.35■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms