Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC58Q4VC31 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
CCDC58Q4VC31 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC58Q4VC31 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC58Q4VC31 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC58Q4VC31 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC58Q4VC31 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC58Q4VC31 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC58Q4VC31 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC58Q4VC31 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC58Q4VC31 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC58Q4VC31 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC58Q4VC31 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC20.6■□□□□ 0.89
CCDC58Q4VC31 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC58Q4VC31 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC58Q4VC31 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC58Q4VC31 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC58Q4VC31 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CCDC58Q4VC31 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC58Q4VC31 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC58Q4VC31 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC58Q4VC31 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC58Q4VC31 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC58Q4VC31 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC20.59■□□□□ 0.89
CCDC58Q4VC31 MIR3648-2-201ENST00000581792 180 ntBASIC20.59■□□□□ 0.89
CCDC58Q4VC31 MIR3648-1-201ENST00000615959 180 ntBASIC20.59■□□□□ 0.89
CCDC58Q4VC31 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.59■□□□□ 0.89
CCDC58Q4VC31 ABCB10P4-201ENST00000566803 2184 ntBASIC20.59■□□□□ 0.89
CCDC58Q4VC31 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.59■□□□□ 0.89
CCDC58Q4VC31 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC58Q4VC31 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC58Q4VC31 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
CCDC58Q4VC31 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.58■□□□□ 0.89
CCDC58Q4VC31 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.58■□□□□ 0.89
CCDC58Q4VC31 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC58Q4VC31 MACF1-219ENST00000484793 834 ntTSL 2 BASIC20.58■□□□□ 0.89
CCDC58Q4VC31 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
CCDC58Q4VC31 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.58■□□□□ 0.89
CCDC58Q4VC31 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC58Q4VC31 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
CCDC58Q4VC31 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC58Q4VC31 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC58Q4VC31 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC58Q4VC31 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC58Q4VC31 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CCDC58Q4VC31 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC58Q4VC31 HLA-L-211ENST00000482052 1765 ntBASIC20.57■□□□□ 0.88
CCDC58Q4VC31 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC58Q4VC31 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC58Q4VC31 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC58Q4VC31 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.57■□□□□ 0.88
CCDC58Q4VC31 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC58Q4VC31 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC58Q4VC31 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC58Q4VC31 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CCDC58Q4VC31 SMPD5-203ENST00000639008 1464 ntBASIC20.56■□□□□ 0.88
CCDC58Q4VC31 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CCDC58Q4VC31 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CCDC58Q4VC31 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC58Q4VC31 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CCDC58Q4VC31 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC58Q4VC31 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CCDC58Q4VC31 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC58Q4VC31 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC58Q4VC31 METRNL-202ENST00000570778 967 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC58Q4VC31 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC20.55■□□□□ 0.88
CCDC58Q4VC31 MOB2-207ENST00000614710 705 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC58Q4VC31 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC58Q4VC31 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC58Q4VC31 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CCDC58Q4VC31 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC58Q4VC31 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC20.54■□□□□ 0.88
CCDC58Q4VC31 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC58Q4VC31 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC58Q4VC31 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC58Q4VC31 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC58Q4VC31 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC58Q4VC31 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC58Q4VC31 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC58Q4VC31 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC58Q4VC31 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC58Q4VC31 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
CCDC58Q4VC31 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.54■□□□□ 0.88
CCDC58Q4VC31 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC58Q4VC31 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC58Q4VC31 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC58Q4VC31 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC58Q4VC31 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC58Q4VC31 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC58Q4VC31 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC58Q4VC31 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC58Q4VC31 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC58Q4VC31 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
CCDC58Q4VC31 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC20.53■□□□□ 0.88
CCDC58Q4VC31 AC060814.1-201ENST00000554326 538 ntBASIC20.53■□□□□ 0.88
CCDC58Q4VC31 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CCDC58Q4VC31 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CCDC58Q4VC31 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC58Q4VC31 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC58Q4VC31 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms