Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC31.26■■■□□ 2.6
COL18A1P39060 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
COL18A1P39060 AC097639.1-201ENST00000565519 1891 ntBASIC31.26■■■□□ 2.59
COL18A1P39060 AL355001.2-201ENST00000620617 1191 ntBASIC31.26■■■□□ 2.59
COL18A1P39060 SRD5A1P1-201ENST00000442297 786 ntBASIC31.25■■■□□ 2.59
COL18A1P39060 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC31.25■■■□□ 2.59
COL18A1P39060 GRAMD4P4-201ENST00000613563 1115 ntBASIC31.25■■■□□ 2.59
COL18A1P39060 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
COL18A1P39060 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC31.25■■■□□ 2.59
COL18A1P39060 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
COL18A1P39060 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC31.24■■■□□ 2.59
COL18A1P39060 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
COL18A1P39060 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC31.24■■■□□ 2.59
COL18A1P39060 PTMA-205ENST00000410064 814 ntTSL 2 BASIC31.24■■■□□ 2.59
COL18A1P39060 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
COL18A1P39060 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC31.23■■■□□ 2.59
COL18A1P39060 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC31.23■■■□□ 2.59
COL18A1P39060 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC31.22■■■□□ 2.59
COL18A1P39060 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC31.22■■■□□ 2.59
COL18A1P39060 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
COL18A1P39060 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC31.22■■■□□ 2.59
COL18A1P39060 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC31.22■■■□□ 2.59
COL18A1P39060 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC31.22■■■□□ 2.59
COL18A1P39060 MIR5787-201ENST00000611784 55 ntBASIC31.22■■■□□ 2.59
COL18A1P39060 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC31.21■■■□□ 2.59
COL18A1P39060 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
COL18A1P39060 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC31.21■■■□□ 2.59
COL18A1P39060 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC31.21■■■□□ 2.59
COL18A1P39060 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC31.21■■■□□ 2.59
COL18A1P39060 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC31.21■■■□□ 2.59
COL18A1P39060 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
COL18A1P39060 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
COL18A1P39060 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC31.19■■■□□ 2.58
COL18A1P39060 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
COL18A1P39060 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
COL18A1P39060 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
COL18A1P39060 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC31.19■■■□□ 2.58
COL18A1P39060 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC31.19■■■□□ 2.58
COL18A1P39060 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
COL18A1P39060 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC31.19■■■□□ 2.58
COL18A1P39060 AC131274.2-201ENST00000580697 1507 ntBASIC31.19■■■□□ 2.58
COL18A1P39060 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC31.19■■■□□ 2.58
COL18A1P39060 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC31.19■■■□□ 2.58
COL18A1P39060 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC31.18■■■□□ 2.58
COL18A1P39060 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
COL18A1P39060 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
COL18A1P39060 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC31.18■■■□□ 2.58
COL18A1P39060 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
COL18A1P39060 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
COL18A1P39060 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC31.17■■■□□ 2.58
COL18A1P39060 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
COL18A1P39060 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
COL18A1P39060 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
COL18A1P39060 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC31.16■■■□□ 2.58
COL18A1P39060 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC31.16■■■□□ 2.58
COL18A1P39060 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
COL18A1P39060 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
COL18A1P39060 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC31.15■■■□□ 2.58
COL18A1P39060 HYI-206ENST00000372434 1025 ntTSL 5 BASIC31.15■■■□□ 2.58
COL18A1P39060 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
COL18A1P39060 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC31.15■■■□□ 2.58
COL18A1P39060 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
COL18A1P39060 MIR6821-201ENST00000617625 74 ntBASIC31.15■■■□□ 2.58
COL18A1P39060 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC31.15■■■□□ 2.58
COL18A1P39060 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
COL18A1P39060 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC31.14■■■□□ 2.58
COL18A1P39060 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
COL18A1P39060 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC31.14■■■□□ 2.58
COL18A1P39060 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC31.14■■■□□ 2.58
COL18A1P39060 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC31.13■■■□□ 2.57
COL18A1P39060 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC31.13■■■□□ 2.57
COL18A1P39060 DUX4L19-201ENST00000557448 1267 ntBASIC31.13■■■□□ 2.57
COL18A1P39060 MIR4767-201ENST00000582827 78 ntBASIC31.13■■■□□ 2.57
COL18A1P39060 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC31.13■■■□□ 2.57
COL18A1P39060 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC31.13■■■□□ 2.57
COL18A1P39060 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
COL18A1P39060 AC097381.1-201ENST00000429019 1296 ntBASIC31.12■■■□□ 2.57
COL18A1P39060 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
COL18A1P39060 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
COL18A1P39060 AC010501.1-201ENST00000606270 1962 ntBASIC31.12■■■□□ 2.57
COL18A1P39060 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
COL18A1P39060 PTCHD3P2-201ENST00000424937 1205 ntBASIC31.12■■■□□ 2.57
COL18A1P39060 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
COL18A1P39060 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC31.11■■■□□ 2.57
COL18A1P39060 AC005703.6-201ENST00000623265 1329 ntBASIC31.11■■■□□ 2.57
COL18A1P39060 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC31.1■■■□□ 2.57
COL18A1P39060 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
COL18A1P39060 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC31.1■■■□□ 2.57
COL18A1P39060 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
COL18A1P39060 SERBP1P1-201ENST00000396021 1160 ntBASIC31.1■■■□□ 2.57
COL18A1P39060 STOX2-205ENST00000513034 807 ntTSL 3 BASIC31.1■■■□□ 2.57
COL18A1P39060 MAG-206ENST00000597035 542 ntTSL 4 BASIC31.1■■■□□ 2.57
COL18A1P39060 AC087623.3-201ENST00000607047 1098 ntBASIC31.1■■■□□ 2.57
COL18A1P39060 ANKRD20A6P-201ENST00000618763 204 ntBASIC31.1■■■□□ 2.57
COL18A1P39060 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC31.09■■■□□ 2.57
COL18A1P39060 AC091305.1-201ENST00000479476 895 ntBASIC31.09■■■□□ 2.57
COL18A1P39060 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC31.09■■■□□ 2.57
COL18A1P39060 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC31.09■■■□□ 2.57
COL18A1P39060 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC31.08■■■□□ 2.57
COL18A1P39060 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC31.08■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms