Protein–RNA interactions for Protein: P35625

TIMP3, Metalloproteinase inhibitor 3, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP3P35625 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TIMP3P35625 AL512631.2-201ENST00000604634 923 ntBASIC20.62■□□□□ 0.89
TIMP3P35625 MIR4466-201ENST00000606121 54 ntBASIC20.62■□□□□ 0.89
TIMP3P35625 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.62■□□□□ 0.89
TIMP3P35625 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
TIMP3P35625 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.62■□□□□ 0.89
TIMP3P35625 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.62■□□□□ 0.89
TIMP3P35625 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
TIMP3P35625 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
TIMP3P35625 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
TIMP3P35625 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TIMP3P35625 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
TIMP3P35625 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.61■□□□□ 0.89
TIMP3P35625 AC004448.1-201ENST00000458332 883 ntBASIC20.61■□□□□ 0.89
TIMP3P35625 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.61■□□□□ 0.89
TIMP3P35625 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.61■□□□□ 0.89
TIMP3P35625 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
TIMP3P35625 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.61■□□□□ 0.89
TIMP3P35625 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
TIMP3P35625 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TIMP3P35625 MIR638-201ENST00000385237 100 ntBASIC20.6■□□□□ 0.89
TIMP3P35625 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
TIMP3P35625 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TIMP3P35625 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.6■□□□□ 0.89
TIMP3P35625 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.6■□□□□ 0.89
TIMP3P35625 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.6■□□□□ 0.89
TIMP3P35625 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TIMP3P35625 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TIMP3P35625 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TIMP3P35625 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.6■□□□□ 0.89
TIMP3P35625 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TIMP3P35625 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.6■□□□□ 0.89
TIMP3P35625 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
TIMP3P35625 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TIMP3P35625 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC20.59■□□□□ 0.89
TIMP3P35625 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TIMP3P35625 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC20.59■□□□□ 0.89
TIMP3P35625 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC20.59■□□□□ 0.89
TIMP3P35625 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
TIMP3P35625 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.59■□□□□ 0.89
TIMP3P35625 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TIMP3P35625 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.59■□□□□ 0.89
TIMP3P35625 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TIMP3P35625 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TIMP3P35625 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
TIMP3P35625 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.58■□□□□ 0.89
TIMP3P35625 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.88
TIMP3P35625 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.88
TIMP3P35625 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC20.58■□□□□ 0.88
TIMP3P35625 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TIMP3P35625 SLC6A10P-202ENST00000431994 2058 ntBASIC20.57■□□□□ 0.88
TIMP3P35625 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TIMP3P35625 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
TIMP3P35625 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TIMP3P35625 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TIMP3P35625 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
TIMP3P35625 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TIMP3P35625 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TIMP3P35625 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TIMP3P35625 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TIMP3P35625 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TIMP3P35625 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TIMP3P35625 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TIMP3P35625 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TIMP3P35625 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.55■□□□□ 0.88
TIMP3P35625 AC145676.1-201ENST00000514988 2004 ntBASIC20.55■□□□□ 0.88
TIMP3P35625 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TIMP3P35625 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TIMP3P35625 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
TIMP3P35625 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
TIMP3P35625 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.55■□□□□ 0.88
TIMP3P35625 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC20.55■□□□□ 0.88
TIMP3P35625 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TIMP3P35625 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TIMP3P35625 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
TIMP3P35625 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TIMP3P35625 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TIMP3P35625 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TIMP3P35625 MIR6089-201ENST00000616698 64 ntBASIC20.54■□□□□ 0.88
TIMP3P35625 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TIMP3P35625 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
TIMP3P35625 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC20.53■□□□□ 0.88
TIMP3P35625 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
TIMP3P35625 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TIMP3P35625 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TIMP3P35625 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.53■□□□□ 0.88
TIMP3P35625 AC110285.6-201ENST00000617652 491 ntBASIC20.53■□□□□ 0.88
TIMP3P35625 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.53■□□□□ 0.88
TIMP3P35625 AC091060.1-201ENST00000623524 1766 ntBASIC20.53■□□□□ 0.88
TIMP3P35625 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
TIMP3P35625 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TIMP3P35625 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TIMP3P35625 AC096631.2-201ENST00000436136 790 ntBASIC20.52■□□□□ 0.88
TIMP3P35625 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.52■□□□□ 0.88
TIMP3P35625 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.52■□□□□ 0.88
TIMP3P35625 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.52■□□□□ 0.88
TIMP3P35625 AC133561.4-201ENST00000566112 224 ntBASIC20.52■□□□□ 0.88
TIMP3P35625 AC005703.6-201ENST00000623265 1329 ntBASIC20.52■□□□□ 0.87
TIMP3P35625 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TIMP3P35625 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms