Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC004448.1-201ENST00000458332 883 ntBASIC29.85■■■□□ 2.37
COL5A3P25940 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC29.84■■■□□ 2.37
COL5A3P25940 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
COL5A3P25940 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC29.84■■■□□ 2.37
COL5A3P25940 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
COL5A3P25940 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC29.83■■■□□ 2.37
COL5A3P25940 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
COL5A3P25940 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC29.83■■■□□ 2.37
COL5A3P25940 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC29.82■■■□□ 2.37
COL5A3P25940 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
COL5A3P25940 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
COL5A3P25940 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
COL5A3P25940 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC29.82■■■□□ 2.36
COL5A3P25940 MIR5787-201ENST00000611784 55 ntBASIC29.82■■■□□ 2.36
COL5A3P25940 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC29.82■■■□□ 2.36
COL5A3P25940 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
COL5A3P25940 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC29.82■■■□□ 2.36
COL5A3P25940 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
COL5A3P25940 AL355001.2-201ENST00000620617 1191 ntBASIC29.82■■■□□ 2.36
COL5A3P25940 AL136967.2-201ENST00000623968 743 ntBASIC29.82■■■□□ 2.36
COL5A3P25940 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC29.81■■■□□ 2.36
COL5A3P25940 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC29.81■■■□□ 2.36
COL5A3P25940 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC29.81■■■□□ 2.36
COL5A3P25940 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC29.81■■■□□ 2.36
COL5A3P25940 AC092666.2-201ENST00000613287 246 ntBASIC29.81■■■□□ 2.36
COL5A3P25940 AC131274.2-201ENST00000580697 1507 ntBASIC29.8■■■□□ 2.36
COL5A3P25940 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
COL5A3P25940 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC29.8■■■□□ 2.36
COL5A3P25940 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC29.8■■■□□ 2.36
COL5A3P25940 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC29.8■■■□□ 2.36
COL5A3P25940 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC29.8■■■□□ 2.36
COL5A3P25940 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
COL5A3P25940 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC29.79■■■□□ 2.36
COL5A3P25940 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
COL5A3P25940 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC29.79■■■□□ 2.36
COL5A3P25940 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC29.79■■■□□ 2.36
COL5A3P25940 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
COL5A3P25940 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC29.79■■■□□ 2.36
COL5A3P25940 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
COL5A3P25940 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
COL5A3P25940 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC29.79■■■□□ 2.36
COL5A3P25940 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
COL5A3P25940 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
COL5A3P25940 PTCHD3P2-201ENST00000424937 1205 ntBASIC29.78■■■□□ 2.36
COL5A3P25940 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC29.78■■■□□ 2.36
COL5A3P25940 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC29.78■■■□□ 2.36
COL5A3P25940 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC29.77■■■□□ 2.36
COL5A3P25940 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC29.77■■■□□ 2.36
COL5A3P25940 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
COL5A3P25940 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC29.77■■■□□ 2.36
COL5A3P25940 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
COL5A3P25940 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC29.76■■■□□ 2.36
COL5A3P25940 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
COL5A3P25940 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC29.76■■■□□ 2.35
COL5A3P25940 AC010501.1-201ENST00000606270 1962 ntBASIC29.76■■■□□ 2.35
COL5A3P25940 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
COL5A3P25940 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
COL5A3P25940 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
COL5A3P25940 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC29.76■■■□□ 2.35
COL5A3P25940 DUX4L19-201ENST00000557448 1267 ntBASIC29.76■■■□□ 2.35
COL5A3P25940 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
COL5A3P25940 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC29.75■■■□□ 2.35
COL5A3P25940 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
COL5A3P25940 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
COL5A3P25940 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC29.75■■■□□ 2.35
COL5A3P25940 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC29.74■■■□□ 2.35
COL5A3P25940 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC29.74■■■□□ 2.35
COL5A3P25940 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC29.74■■■□□ 2.35
COL5A3P25940 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC29.74■■■□□ 2.35
COL5A3P25940 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC29.74■■■□□ 2.35
COL5A3P25940 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC29.74■■■□□ 2.35
COL5A3P25940 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
COL5A3P25940 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
COL5A3P25940 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC29.74■■■□□ 2.35
COL5A3P25940 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC29.74■■■□□ 2.35
COL5A3P25940 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
COL5A3P25940 MIR4767-201ENST00000582827 78 ntBASIC29.74■■■□□ 2.35
COL5A3P25940 AC005703.6-201ENST00000623265 1329 ntBASIC29.73■■■□□ 2.35
COL5A3P25940 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
COL5A3P25940 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC29.73■■■□□ 2.35
COL5A3P25940 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
COL5A3P25940 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
COL5A3P25940 MIR6821-201ENST00000617625 74 ntBASIC29.72■■■□□ 2.35
COL5A3P25940 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC29.72■■■□□ 2.35
COL5A3P25940 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
COL5A3P25940 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC29.72■■■□□ 2.35
COL5A3P25940 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC29.71■■■□□ 2.35
COL5A3P25940 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC29.71■■■□□ 2.35
COL5A3P25940 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC29.71■■■□□ 2.35
COL5A3P25940 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
COL5A3P25940 AC097381.1-201ENST00000429019 1296 ntBASIC29.7■■■□□ 2.34
COL5A3P25940 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC29.7■■■□□ 2.34
COL5A3P25940 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC29.7■■■□□ 2.34
COL5A3P25940 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC29.69■■■□□ 2.34
COL5A3P25940 AC091305.1-201ENST00000479476 895 ntBASIC29.69■■■□□ 2.34
COL5A3P25940 ANKRD20A6P-201ENST00000618763 204 ntBASIC29.69■■■□□ 2.34
COL5A3P25940 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC29.69■■■□□ 2.34
COL5A3P25940 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
COL5A3P25940 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC29.69■■■□□ 2.34
COL5A3P25940 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms