Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 RNF213-201ENST00000319921 5316 ntTSL 1 (best) BASIC12.44□□□□□ -0.422e-6■■■■□ 22.3
YBX3P16989 PI4KA-208ENST00000475414 400 ntTSL 59.71□□□□□ -0.861e-8■■■■□ 22.2
YBX3P16989 F7-205ENST00000479674 767 ntTSL 530.57■■■□□ 2.481e-7■■■■□ 22.2
YBX3P16989 F7-203ENST00000444337 564 ntTSL 526.4■■□□□ 1.821e-7■■■■□ 22.2
YBX3P16989 F7-204ENST00000473085 558 ntTSL 424.51■■□□□ 1.511e-7■■■■□ 22.2
YBX3P16989 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.471e-7■■■■□ 22.2
YBX3P16989 F7-206ENST00000541084 2873 ntTSL 2 BASIC12.17□□□□□ -0.461e-7■■■■□ 22.2
YBX3P16989 F7-202ENST00000375581 3109 ntAPPRIS P4 TSL 1 (best) BASIC11.28□□□□□ -0.61e-7■■■■□ 22.2
YBX3P16989 FAM20B-202ENST00000440702 603 ntTSL 323.64■■□□□ 1.374e-9■■■■□ 22.2
YBX3P16989 CBFA2T3-204ENST00000563640 664 ntTSL 221.16■□□□□ 0.982e-8■■■■□ 22.2
YBX3P16989 CBFA2T3-207ENST00000564416 399 ntTSL 520.56■□□□□ 0.882e-8■■■■□ 22.2
YBX3P16989 CBFA2T3-210ENST00000569464 1327 ntTSL 1 (best)18.08■□□□□ 0.492e-8■■■■□ 22.2
YBX3P16989 CBFA2T3-209ENST00000569443 469 ntTSL 515.96■□□□□ 0.152e-8■■■■□ 22.2
YBX3P16989 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.48□□□□□ -0.092e-8■■■■□ 22.2
YBX3P16989 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.112e-8■■■■□ 22.2
YBX3P16989 CBFA2T3-211ENST00000570046 284 ntTSL 312.72□□□□□ -0.372e-8■■■■□ 22.2
YBX3P16989 MSN-206ENST00000609672 568 ntTSL 417.01■□□□□ 0.316e-10■■■■□ 22.2
YBX3P16989 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC29.73■■■□□ 2.352e-6■■■■□ 22.1
YBX3P16989 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC29.19■■■□□ 2.262e-6■■■■□ 22.1
YBX3P16989 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC28.55■■■□□ 2.162e-6■■■■□ 22.1
YBX3P16989 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC27.21■■□□□ 1.952e-6■■■■□ 22.1
YBX3P16989 SIRT3-214ENST00000532837 1588 ntTSL 226.41■■□□□ 1.822e-6■■■■□ 22.1
YBX3P16989 SIRT3-211ENST00000529937 2627 ntTSL 520.36■□□□□ 0.852e-6■■■■□ 22.1
YBX3P16989 NUP54-206ENST00000508465 744 ntTSL 37.3□□□□□ -1.241e-7■■■■□ 22.1
YBX3P16989 NUP54-208ENST00000508604 1671 ntTSL 26.37□□□□□ -1.391e-7■■■■□ 22.1
YBX3P16989 COPB2-201ENST00000333188 3360 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.833e-7■■■■□ 22.1
YBX3P16989 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.55□□□□□ -1.523e-7■■■■□ 22.1
YBX3P16989 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC22.68■■□□□ 1.224e-8■■■■□ 22.1
YBX3P16989 MEAF6-208ENST00000487788 1351 ntTSL 27.08□□□□□ -1.284e-8■■■■□ 22.1
YBX3P16989 ICMT-203ENST00000489498 2612 ntTSL 1 (best)17.52■□□□□ 0.48e-7■■■■□ 22.1
YBX3P16989 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.268e-7■■■■□ 22.1
YBX3P16989 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.042e-6■■■■□ 22.1
YBX3P16989 KMT2E-203ENST00000334884 6840 ntTSL 515.17■□□□□ 0.022e-6■■■■□ 22.1
YBX3P16989 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.032e-6■■■■□ 22.1
YBX3P16989 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC28.1■■■□□ 2.094e-21■■■■□ 22.1
YBX3P16989 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.935e-7■■■■□ 22.1
YBX3P16989 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.825e-7■■■■□ 22.1
YBX3P16989 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.615e-7■■■■□ 22.1
YBX3P16989 HPCAL1-203ENST00000419810 4781 ntTSL 1 (best)13.55□□□□□ -0.245e-7■■■■□ 22.1
YBX3P16989 INVS-201ENST00000262456 2968 ntTSL 5 BASIC13.99□□□□□ -0.172e-6■■■■□ 22.1
YBX3P16989 INVS-202ENST00000262457 3709 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.262e-6■■■■□ 22.1
YBX3P16989 ATRAID-203ENST00000419744 612 ntTSL 211.26□□□□□ -0.615e-9■■■■□ 22.1
YBX3P16989 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.333e-7■■■■□ 22.1
YBX3P16989 COPS3-204ENST00000462236 551 ntTSL 56.86□□□□□ -1.316e-7■■■■□ 22.1
YBX3P16989 EIF2S1-204ENST00000555876 783 ntTSL 27.79□□□□□ -1.163e-13■■■■□ 22.1
YBX3P16989 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC27.21■■□□□ 1.955e-6■■■■□ 22.1
YBX3P16989 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.655e-6■■■■□ 22.1
YBX3P16989 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.82■□□□□ 0.445e-6■■■■□ 22.1
YBX3P16989 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.45e-6■■■■□ 22.1
YBX3P16989 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.75■□□□□ 0.115e-6■■■■□ 22.1
YBX3P16989 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.036e-12■■■■□ 22.1
YBX3P16989 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.133e-6■■■■□ 22.1
YBX3P16989 ABCC4-202ENST00000467685 697 ntTSL 314.1□□□□□ -0.153e-6■■■■□ 22.1
YBX3P16989 MYBBP1A-202ENST00000381556 4104 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.623e-6■■■■□ 22.1
YBX3P16989 MYBBP1A-207ENST00000573116 3795 ntAPPRIS ALT2 TSL 1 (best)11□□□□□ -0.653e-6■■■■□ 22.1
YBX3P16989 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC27.55■■■□□ 23e-6■■■■□ 22.1
YBX3P16989 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC25.73■■□□□ 1.713e-6■■■■□ 22.1
YBX3P16989 BX890604.1-204ENST00000475317 696 ntTSL 220.91■□□□□ 0.943e-6■■■■□ 22.1
YBX3P16989 BX890604.1-206ENST00000471090 922 ntTSL 3 BASIC10.29□□□□□ -0.763e-6■■■■□ 22.1
YBX3P16989 BX890604.1-203ENST00000483854 711 ntTSL 1 (best)9.21□□□□□ -0.943e-6■■■■□ 22.1
YBX3P16989 BX890604.1-202ENST00000469903 426 ntTSL 25.19□□□□□ -1.583e-6■■■■□ 22.1
YBX3P16989 SORD-204ENST00000558789 1553 ntTSL 219.73■□□□□ 0.758e-7■■■■□ 22
YBX3P16989 SORD-205ENST00000559230 1502 ntTSL 1 (best)15.49■□□□□ 0.078e-7■■■■□ 22
YBX3P16989 SORD-203ENST00000558580 1395 ntTSL 5 BASIC13.29□□□□□ -0.288e-7■■■■□ 22
YBX3P16989 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.346e-7■■■■□ 22
YBX3P16989 UPF1-210ENST00000600689 3084 ntTSL 218.55■□□□□ 0.561e-6■■■■□ 22
YBX3P16989 C17orf49-204ENST00000547709 626 ntTSL 318.99■□□□□ 0.633e-7■■■■□ 22
YBX3P16989 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC30.06■■■□□ 2.49e-11■■■■□ 22
YBX3P16989 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC26.85■■□□□ 1.899e-11■■■■□ 22
YBX3P16989 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.879e-11■■■■□ 22
YBX3P16989 SLC35B2-203ENST00000495706 1859 ntTSL 326.51■■□□□ 1.839e-11■■■■□ 22
YBX3P16989 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC25.91■■□□□ 1.749e-11■■■■□ 22
YBX3P16989 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC21.56■■□□□ 1.049e-11■■■■□ 22
YBX3P16989 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC17.95■□□□□ 0.469e-11■■■■□ 22
YBX3P16989 SELENOM-206ENST00000469262 334 ntTSL 226.5■■□□□ 1.832e-9■■■■□ 22
YBX3P16989 SELENOM-209ENST00000495533 673 ntTSL 223.93■■□□□ 1.422e-9■■■■□ 22
YBX3P16989 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.332e-9■■■■□ 22
YBX3P16989 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.282e-9■■■■□ 22
YBX3P16989 SELENOM-208ENST00000491958 605 ntTSL 222.23■■□□□ 1.152e-9■■■■□ 22
YBX3P16989 SELENOM-205ENST00000465536 703 ntTSL 222.2■■□□□ 1.142e-9■■■■□ 22
YBX3P16989 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.972e-9■■■■□ 22
YBX3P16989 SELENOM-207ENST00000490967 2070 ntTSL 1 (best)18.77■□□□□ 0.592e-9■■■■□ 22
YBX3P16989 SELENOM-203ENST00000460642 500 ntTSL 315.21■□□□□ 0.032e-9■■■■□ 22
YBX3P16989 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.884e-6■■■■□ 22
YBX3P16989 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.685e-7■■■■□ 22
YBX3P16989 GNB4-205ENST00000497513 571 ntTSL 420.7■□□□□ 0.95e-7■■■■□ 22
YBX3P16989 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.125e-7■■■■□ 22
YBX3P16989 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.212e-8■■■■□ 22
YBX3P16989 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC15.16■□□□□ 0.022e-6■■■■□ 22
YBX3P16989 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.032e-6■■■■□ 22
YBX3P16989 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.28■□□□□ 0.845e-7■■■■□ 21.9
YBX3P16989 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.3■□□□□ 0.685e-7■■■■□ 21.9
YBX3P16989 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.85■□□□□ 0.615e-7■■■■□ 21.9
YBX3P16989 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.81■□□□□ 0.65e-7■■■■□ 21.9
YBX3P16989 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.383e-9■■■■□ 21.9
YBX3P16989 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.364e-10■■■■□ 21.9
YBX3P16989 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC28.45■■■□□ 2.144e-10■■■■□ 21.9
YBX3P16989 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC28.45■■■□□ 2.144e-10■■■■□ 21.9
YBX3P16989 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.622e-6■■■■□ 21.9
YBX3P16989 AAAS-215ENST00000549983 860 ntTSL 320.75■□□□□ 0.912e-8■■■■□ 21.9
Retrieved 100 of 29,075 protein–RNA pairs in 479.5 ms