RNA–Protein interactions for RNA: ENST00000462236.1

COPS3-204, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 5

Gene COPS3, Length 551 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-204ENST00000462236 AEBP2Q6ZN18 517 aaPredicted RBP21.21■□□□□ 0.99
COPS3-204ENST00000462236 CHIC1Q5VXU3 224 aa21.07■□□□□ 0.96
COPS3-204ENST00000462236 PHF23Q9BUL5 403 aaPredicted RBP18.48■□□□□ 0.55
COPS3-204ENST00000462236 SENP3Q9H4L4 574 aaPredicted RBP18.08■□□□□ 0.48
COPS3-204ENST00000462236 PLPPR3Q6T4P5 718 aa17.27■□□□□ 0.36
COPS3-204ENST00000462236 FOXD1Q16676 465 aa16.65■□□□□ 0.26
COPS3-204ENST00000462236 ADRA2BP18089 450 aa16.19■□□□□ 0.18
COPS3-204ENST00000462236 PPP6R1Q9UPN7 881 aa16.19■□□□□ 0.18
COPS3-204ENST00000462236 PIAS4Q8N2W9 510 aaPredicted RBP15.77■□□□□ 0.12
COPS3-204ENST00000462236 MSH5O43196 834 aa15.36■□□□□ 0.05
COPS3-204ENST00000462236 PPP4R3CPQ6ZMV5 832 aa15.19■□□□□ 0.02
COPS3-204ENST00000462236 POTEDQ86YR6 584 aa15.18■□□□□ 0.02
COPS3-204ENST00000462236 KCNA4P22459 653 aa15.09■□□□□ 0.01
COPS3-204ENST00000462236 SCAF1Q9H7N4 1312 aaKnown RBP14.99□□□□□ -0.01
COPS3-204ENST00000462236 NCBP3Q53F19 620 aaKnown RBP14.96□□□□□ -0.01
COPS3-204ENST00000462236 CNKSR2Q8WXI2 1034 aa14.77□□□□□ -0.05
COPS3-204ENST00000462236 NPM3O75607 178 aaKnown RBP14.64□□□□□ -0.07
COPS3-204ENST00000462236 MAPK8IP2Q13387 824 aaPredicted RBP14.58□□□□□ -0.08
COPS3-204ENST00000462236 SLC4A1APQ9BWU0 796 aaKnown RBP14.47□□□□□ -0.09
COPS3-204ENST00000462236 DMRT2Q9Y5R5 561 aa14.46□□□□□ -0.09
COPS3-204ENST00000462236 RNF216Q9NWF9 866 aaPredicted RBP14.42□□□□□ -0.1
COPS3-204ENST00000462236 DNAJC5BQ9UF47 199 aa14.37□□□□□ -0.11
COPS3-204ENST00000462236 HOXD11P31277 338 aaPredicted RBP14.29□□□□□ -0.12
COPS3-204ENST00000462236 EHMT2Q96KQ7 1210 aa14.26□□□□□ -0.13
COPS3-204ENST00000462236 CSRNP3Q8WYN3 585 aa14.05□□□□□ -0.16
COPS3-204ENST00000462236 FOXD4L1Q9NU39 408 aa13.9□□□□□ -0.18
COPS3-204ENST00000462236 ZBTB22O15209 634 aa13.87□□□□□ -0.19
COPS3-204ENST00000462236 SLC4A2P04920 1241 aa13.74□□□□□ -0.21
COPS3-204ENST00000462236 DCAF8L1A6NGE4 600 aa13.7□□□□□ -0.22
COPS3-204ENST00000462236 MYCNP04198 464 aaPredicted RBP13.59□□□□□ -0.23
COPS3-204ENST00000462236 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.56□□□□□ -0.24
COPS3-204ENST00000462236 ATXN8OSP0DMR3 200 aa13.49□□□□□ -0.25
COPS3-204ENST00000462236 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.42□□□□□ -0.26
COPS3-204ENST00000462236 HNRNPUL2Q1KMD3 747 aaKnown RBP13.42□□□□□ -0.26
COPS3-204ENST00000462236 U3KPZ7 1027 aaPredicted RBP13.36□□□□□ -0.27
COPS3-204ENST00000462236 SAMD1Q6SPF0 538 aaPredicted RBP13.35□□□□□ -0.27
COPS3-204ENST00000462236 APLP2Q06481 763 aa13.24□□□□□ -0.29
COPS3-204ENST00000462236 RNF39Q9H2S5 420 aa13.14□□□□□ -0.31
COPS3-204ENST00000462236 ATF5Q9Y2D1 282 aaPredicted RBP13.07□□□□□ -0.32
COPS3-204ENST00000462236 C1QBPQ07021 282 aaKnown RBP13.05□□□□□ -0.32
COPS3-204ENST00000462236 ZNF219Q9P2Y4 722 aaPredicted RBP12.94□□□□□ -0.34
COPS3-204ENST00000462236 SPINK5Q9NQ38 1064 aaPredicted RBP12.84□□□□□ -0.35
COPS3-204ENST00000462236 CAPN15O75808 1086 aa12.81□□□□□ -0.36
COPS3-204ENST00000462236 TRHP20396 242 aaPredicted RBP12.8□□□□□ -0.36
COPS3-204ENST00000462236 POLA2Q14181 598 aa12.69□□□□□ -0.38
COPS3-204ENST00000462236 FKBP8Q14318 412 aa12.67□□□□□ -0.38
COPS3-204ENST00000462236 FBLN2P98095 1184 aa12.64□□□□□ -0.39
COPS3-204ENST00000462236 ZBTB12Q9Y330 459 aaPredicted RBP12.64□□□□□ -0.39
COPS3-204ENST00000462236 DSG3P32926 999 aa12.58□□□□□ -0.4
COPS3-204ENST00000462236 CACNB1Q02641 598 aaPredicted RBP12.56□□□□□ -0.4
COPS3-204ENST00000462236 MKRN4PQ13434 485 aaPredicted RBP12.55□□□□□ -0.4
COPS3-204ENST00000462236 ABCB7O75027 752 aa12.54□□□□□ -0.4
COPS3-204ENST00000462236 SPDYE4A6NLX3 237 aa12.45□□□□□ -0.42
COPS3-204ENST00000462236 PROM2Q8N271 834 aa12.35□□□□□ -0.43
COPS3-204ENST00000462236 FBXO3Q9UK99 471 aa12.29□□□□□ -0.44
COPS3-204ENST00000462236 NISCHQ9Y2I1 1504 aa12.27□□□□□ -0.44
COPS3-204ENST00000462236 SPDYE2BA6NHP3 402 aa12.27□□□□□ -0.45
COPS3-204ENST00000462236 SPDYE6P0CI01 402 aa12.27□□□□□ -0.45
COPS3-204ENST00000462236 SPDYE2Q495Y8 402 aa12.27□□□□□ -0.45
COPS3-204ENST00000462236 OSCARQ8IYS5 282 aa12.22□□□□□ -0.45
COPS3-204ENST00000462236 ZNF692Q9BU19 519 aaPredicted RBP12.21□□□□□ -0.45
COPS3-204ENST00000462236 SSUH2Q9Y2M2 353 aa12.18□□□□□ -0.46
COPS3-204ENST00000462236 AMER1Q5JTC6 1135 aaPredicted RBP12.13□□□□□ -0.47
COPS3-204ENST00000462236 RBM42Q9BTD8 480 aaKnown RBP12.07□□□□□ -0.48
COPS3-204ENST00000462236 PABPN1Q86U42 306 aaKnown RBP eCLIP12.03□□□□□ -0.48
COPS3-204ENST00000462236 STAG3Q9UJ98 1225 aa12.03□□□□□ -0.48
COPS3-204ENST00000462236 VASPP50552 380 aaPredicted RBP12.02□□□□□ -0.49
COPS3-204ENST00000462236 RTN4Q9NQC3 1192 aaKnown RBP11.97□□□□□ -0.49
COPS3-204ENST00000462236 AKT1S1Q96B36 256 aa11.95□□□□□ -0.5
COPS3-204ENST00000462236 IFNLR1Q8IU57 520 aaPredicted RBP11.85□□□□□ -0.51
COPS3-204ENST00000462236 SPDYE1Q8NFV5 336 aaPredicted RBP11.84□□□□□ -0.51
COPS3-204ENST00000462236 PLEKHG5O94827 1062 aa11.78□□□□□ -0.52
COPS3-204ENST00000462236 REM2Q8IYK8 340 aaPredicted RBP11.78□□□□□ -0.52
COPS3-204ENST00000462236 PLCD3Q8N3E9 789 aa11.78□□□□□ -0.52
COPS3-204ENST00000462236 MIER1Q8N108 512 aa11.76□□□□□ -0.53
COPS3-204ENST00000462236 ZBTB47Q9UFB7 747 aaPredicted RBP11.75□□□□□ -0.53
COPS3-204ENST00000462236 KLHL34Q8N239 644 aa11.73□□□□□ -0.53
COPS3-204ENST00000462236 SPOCK2Q92563 424 aa11.73□□□□□ -0.53
COPS3-204ENST00000462236 PRR29P0C7W0 189 aa11.66□□□□□ -0.54
COPS3-204ENST00000462236 CLEC11AQ9Y240 323 aa11.66□□□□□ -0.54
COPS3-204ENST00000462236 POTEHQ6S545 545 aa11.65□□□□□ -0.54
COPS3-204ENST00000462236 PITPNM1O00562 1244 aa11.61□□□□□ -0.55
COPS3-204ENST00000462236 PKD2Q13563 968 aa11.56□□□□□ -0.56
COPS3-204ENST00000462236 CREBZFQ9NS37 354 aa11.56□□□□□ -0.56
COPS3-204ENST00000462236 TRIM41Q8WV44 630 aa11.49□□□□□ -0.57
COPS3-204ENST00000462236 MNX1P50219 401 aaPredicted RBP11.48□□□□□ -0.57
COPS3-204ENST00000462236 GSE1Q14687 1217 aa11.47□□□□□ -0.57
COPS3-204ENST00000462236 NPM1P06748 294 aaKnown RBP eCLIP11.46□□□□□ -0.57
COPS3-204ENST00000462236 NUBP1P53384 320 aa11.45□□□□□ -0.58
COPS3-204ENST00000462236 ECM2O94769 699 aaPredicted RBP11.44□□□□□ -0.58
COPS3-204ENST00000462236 CIZ1Q9ULV3 898 aaPredicted RBP11.42□□□□□ -0.58
COPS3-204ENST00000462236 FXR2P51116 673 aaKnown RBP eCLIP11.4□□□□□ -0.58
COPS3-204ENST00000462236 FAM212AQ96EL1 285 aa11.39□□□□□ -0.59
COPS3-204ENST00000462236 CHRDL2Q6WN34 429 aa11.37□□□□□ -0.59
COPS3-204ENST00000462236 DCAF8Q5TAQ9 597 aa11.35□□□□□ -0.59
COPS3-204ENST00000462236 ABCC9O60706 1549 aa11.35□□□□□ -0.59
COPS3-204ENST00000462236 FARP1Q9Y4F1 1045 aaPredicted RBP11.33□□□□□ -0.6
COPS3-204ENST00000462236 SLC24A1O60721 1099 aa11.32□□□□□ -0.6
COPS3-204ENST00000462236 DCAF8L2P0C7V8 631 aa11.32□□□□□ -0.6
COPS3-204ENST00000462236 PRKAR2AP13861 404 aaKnown RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms