Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC31.11■■■□□ 2.57
CSB-PGBD3P0DP91 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
CSB-PGBD3P0DP91 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC31.11■■■□□ 2.57
CSB-PGBD3P0DP91 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
CSB-PGBD3P0DP91 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
CSB-PGBD3P0DP91 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
CSB-PGBD3P0DP91 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC31.1■■■□□ 2.57
CSB-PGBD3P0DP91 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC31.1■■■□□ 2.57
CSB-PGBD3P0DP91 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
CSB-PGBD3P0DP91 AC004448.1-201ENST00000458332 883 ntBASIC31.1■■■□□ 2.57
CSB-PGBD3P0DP91 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC31.1■■■□□ 2.57
CSB-PGBD3P0DP91 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
CSB-PGBD3P0DP91 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
CSB-PGBD3P0DP91 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC31.09■■■□□ 2.57
CSB-PGBD3P0DP91 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC31.09■■■□□ 2.57
CSB-PGBD3P0DP91 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC31.09■■■□□ 2.57
CSB-PGBD3P0DP91 AC096887.2-201ENST00000623443 1957 ntBASIC31.09■■■□□ 2.57
CSB-PGBD3P0DP91 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC31.09■■■□□ 2.57
CSB-PGBD3P0DP91 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC31.09■■■□□ 2.57
CSB-PGBD3P0DP91 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC31.09■■■□□ 2.57
CSB-PGBD3P0DP91 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CSB-PGBD3P0DP91 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
CSB-PGBD3P0DP91 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CSB-PGBD3P0DP91 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC31.08■■■□□ 2.57
CSB-PGBD3P0DP91 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC31.08■■■□□ 2.57
CSB-PGBD3P0DP91 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.57
CSB-PGBD3P0DP91 ERN1-208ENST00000606895 2068 ntBASIC31.07■■■□□ 2.56
CSB-PGBD3P0DP91 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC31.07■■■□□ 2.56
CSB-PGBD3P0DP91 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC31.07■■■□□ 2.56
CSB-PGBD3P0DP91 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
CSB-PGBD3P0DP91 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC31.06■■■□□ 2.56
CSB-PGBD3P0DP91 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC31.06■■■□□ 2.56
CSB-PGBD3P0DP91 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
CSB-PGBD3P0DP91 STOX2-205ENST00000513034 807 ntTSL 3 BASIC31.06■■■□□ 2.56
CSB-PGBD3P0DP91 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC31.06■■■□□ 2.56
CSB-PGBD3P0DP91 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
CSB-PGBD3P0DP91 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC31.06■■■□□ 2.56
CSB-PGBD3P0DP91 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC31.06■■■□□ 2.56
CSB-PGBD3P0DP91 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
CSB-PGBD3P0DP91 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
CSB-PGBD3P0DP91 AC005703.6-201ENST00000623265 1329 ntBASIC31.05■■■□□ 2.56
CSB-PGBD3P0DP91 MIR939-201ENST00000401314 82 ntBASIC31.05■■■□□ 2.56
CSB-PGBD3P0DP91 DUX4L19-201ENST00000557448 1267 ntBASIC31.05■■■□□ 2.56
CSB-PGBD3P0DP91 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC31.05■■■□□ 2.56
CSB-PGBD3P0DP91 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
CSB-PGBD3P0DP91 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
CSB-PGBD3P0DP91 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
CSB-PGBD3P0DP91 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
CSB-PGBD3P0DP91 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC31.04■■■□□ 2.56
CSB-PGBD3P0DP91 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC31.04■■■□□ 2.56
CSB-PGBD3P0DP91 AP001330.3-201ENST00000520123 633 ntBASIC31.04■■■□□ 2.56
CSB-PGBD3P0DP91 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC31.04■■■□□ 2.56
CSB-PGBD3P0DP91 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
CSB-PGBD3P0DP91 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
CSB-PGBD3P0DP91 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
CSB-PGBD3P0DP91 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
CSB-PGBD3P0DP91 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC31.03■■■□□ 2.56
CSB-PGBD3P0DP91 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC31.03■■■□□ 2.56
CSB-PGBD3P0DP91 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
CSB-PGBD3P0DP91 SHF-206ENST00000560471 2499 ntTSL 5 BASIC31.03■■■□□ 2.56
CSB-PGBD3P0DP91 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
CSB-PGBD3P0DP91 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC31.02■■■□□ 2.56
CSB-PGBD3P0DP91 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
CSB-PGBD3P0DP91 SYT6-210ENST00000641643 1587 ntBASIC31.02■■■□□ 2.56
CSB-PGBD3P0DP91 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
CSB-PGBD3P0DP91 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC31.02■■■□□ 2.56
CSB-PGBD3P0DP91 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC31.02■■■□□ 2.56
CSB-PGBD3P0DP91 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
CSB-PGBD3P0DP91 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC31.01■■■□□ 2.55
CSB-PGBD3P0DP91 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
CSB-PGBD3P0DP91 RBM38-205ENST00000440234 686 ntTSL 2 BASIC31.01■■■□□ 2.55
CSB-PGBD3P0DP91 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC31.01■■■□□ 2.55
CSB-PGBD3P0DP91 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC31.01■■■□□ 2.55
CSB-PGBD3P0DP91 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
CSB-PGBD3P0DP91 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC31■■■□□ 2.55
CSB-PGBD3P0DP91 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC31■■■□□ 2.55
CSB-PGBD3P0DP91 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC31■■■□□ 2.55
CSB-PGBD3P0DP91 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
CSB-PGBD3P0DP91 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC31■■■□□ 2.55
CSB-PGBD3P0DP91 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC30.99■■■□□ 2.55
CSB-PGBD3P0DP91 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
CSB-PGBD3P0DP91 ANKRD20A6P-201ENST00000618763 204 ntBASIC30.99■■■□□ 2.55
CSB-PGBD3P0DP91 SF1-220ENST00000626028 704 ntTSL 2 BASIC30.99■■■□□ 2.55
CSB-PGBD3P0DP91 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CSB-PGBD3P0DP91 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC30.98■■■□□ 2.55
CSB-PGBD3P0DP91 AC091305.1-201ENST00000479476 895 ntBASIC30.98■■■□□ 2.55
CSB-PGBD3P0DP91 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
CSB-PGBD3P0DP91 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC30.98■■■□□ 2.55
CSB-PGBD3P0DP91 MIR4767-201ENST00000582827 78 ntBASIC30.98■■■□□ 2.55
CSB-PGBD3P0DP91 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC30.98■■■□□ 2.55
CSB-PGBD3P0DP91 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC30.98■■■□□ 2.55
CSB-PGBD3P0DP91 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC30.98■■■□□ 2.55
CSB-PGBD3P0DP91 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
CSB-PGBD3P0DP91 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
CSB-PGBD3P0DP91 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC30.97■■■□□ 2.55
CSB-PGBD3P0DP91 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC30.97■■■□□ 2.55
CSB-PGBD3P0DP91 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
CSB-PGBD3P0DP91 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC30.96■■■□□ 2.55
CSB-PGBD3P0DP91 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
CSB-PGBD3P0DP91 PARL-206ENST00000435888 1098 ntTSL 5 BASIC30.96■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms