Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DQA1P01909 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DQA1P01909 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DQA1P01909 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC17.42■□□□□ 0.38
HLA-DQA1P01909 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC17.42■□□□□ 0.38
HLA-DQA1P01909 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DQA1P01909 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC17.42■□□□□ 0.38
HLA-DQA1P01909 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC17.42■□□□□ 0.38
HLA-DQA1P01909 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DQA1P01909 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DQA1P01909 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DQA1P01909 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DQA1P01909 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DQA1P01909 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DQA1P01909 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DQA1P01909 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
HLA-DQA1P01909 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DQA1P01909 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
HLA-DQA1P01909 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DQA1P01909 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DQA1P01909 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DQA1P01909 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DQA1P01909 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DQA1P01909 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DQA1P01909 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DQA1P01909 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DQA1P01909 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DQA1P01909 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DQA1P01909 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DQA1P01909 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
HLA-DQA1P01909 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC17.39■□□□□ 0.37
HLA-DQA1P01909 PEX7-203ENST00000541292 945 ntTSL 5 BASIC17.39■□□□□ 0.37
HLA-DQA1P01909 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DQA1P01909 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC17.39■□□□□ 0.37
HLA-DQA1P01909 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HLA-DQA1P01909 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DQA1P01909 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DQA1P01909 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
HLA-DQA1P01909 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DQA1P01909 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DQA1P01909 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DQA1P01909 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC17.38■□□□□ 0.37
HLA-DQA1P01909 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC17.38■□□□□ 0.37
HLA-DQA1P01909 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC17.38■□□□□ 0.37
HLA-DQA1P01909 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DQA1P01909 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DQA1P01909 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HLA-DQA1P01909 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DQA1P01909 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
HLA-DQA1P01909 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DQA1P01909 AC108673.1-201ENST00000510422 1159 ntBASIC17.37■□□□□ 0.37
HLA-DQA1P01909 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC17.37■□□□□ 0.37
HLA-DQA1P01909 AC044849.2-201ENST00000606596 710 ntBASIC17.37■□□□□ 0.37
HLA-DQA1P01909 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DQA1P01909 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DQA1P01909 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
HLA-DQA1P01909 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HLA-DQA1P01909 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DQA1P01909 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC17.36■□□□□ 0.37
HLA-DQA1P01909 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DQA1P01909 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DQA1P01909 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DQA1P01909 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HLA-DQA1P01909 NRG1-221ENST00000614767 762 ntTSL 5 BASIC17.36■□□□□ 0.37
HLA-DQA1P01909 AC110285.7-201ENST00000624417 1536 ntBASIC17.36■□□□□ 0.37
HLA-DQA1P01909 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC17.35■□□□□ 0.37
HLA-DQA1P01909 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DQA1P01909 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DQA1P01909 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC17.35■□□□□ 0.37
HLA-DQA1P01909 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DQA1P01909 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DQA1P01909 MED17-221ENST00000639724 2317 ntTSL 5 BASIC17.35■□□□□ 0.37
HLA-DQA1P01909 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DQA1P01909 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC17.35■□□□□ 0.37
HLA-DQA1P01909 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC17.35■□□□□ 0.37
HLA-DQA1P01909 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DQA1P01909 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC17.35■□□□□ 0.37
HLA-DQA1P01909 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC17.35■□□□□ 0.37
HLA-DQA1P01909 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DQA1P01909 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HLA-DQA1P01909 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DQA1P01909 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DQA1P01909 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DQA1P01909 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DQA1P01909 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DQA1P01909 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
HLA-DQA1P01909 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC17.34■□□□□ 0.37
HLA-DQA1P01909 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC17.34■□□□□ 0.37
HLA-DQA1P01909 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DQA1P01909 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DQA1P01909 AC087741.3-201ENST00000624270 1347 ntBASIC17.34■□□□□ 0.37
HLA-DQA1P01909 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC17.34■□□□□ 0.37
HLA-DQA1P01909 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HLA-DQA1P01909 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
HLA-DQA1P01909 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
HLA-DQA1P01909 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
HLA-DQA1P01909 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
HLA-DQA1P01909 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC17.33■□□□□ 0.37
HLA-DQA1P01909 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
HLA-DQA1P01909 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms