Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CLPTM1O96005 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CLPTM1O96005 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CLPTM1O96005 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CLPTM1O96005 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CLPTM1O96005 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CLPTM1O96005 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CLPTM1O96005 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CLPTM1O96005 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CLPTM1O96005 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CLPTM1O96005 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CLPTM1O96005 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.73■■□□□ 1.07
CLPTM1O96005 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
CLPTM1O96005 PKD1P6-201ENST00000343738 4769 ntBASIC21.73■■□□□ 1.07
CLPTM1O96005 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.73■■□□□ 1.07
CLPTM1O96005 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CLPTM1O96005 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CLPTM1O96005 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CLPTM1O96005 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CLPTM1O96005 AC137767.1-201ENST00000602918 1920 ntBASIC21.72■■□□□ 1.07
CLPTM1O96005 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.72■■□□□ 1.07
CLPTM1O96005 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CLPTM1O96005 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CLPTM1O96005 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CLPTM1O96005 MIR4449-201ENST00000578365 66 ntBASIC21.72■■□□□ 1.07
CLPTM1O96005 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CLPTM1O96005 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CLPTM1O96005 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CLPTM1O96005 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CLPTM1O96005 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CLPTM1O96005 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.71■■□□□ 1.07
CLPTM1O96005 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.71■■□□□ 1.07
CLPTM1O96005 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.71■■□□□ 1.07
CLPTM1O96005 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC21.71■■□□□ 1.07
CLPTM1O96005 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.71■■□□□ 1.07
CLPTM1O96005 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
CLPTM1O96005 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.7■■□□□ 1.07
CLPTM1O96005 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CLPTM1O96005 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CLPTM1O96005 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC21.7■■□□□ 1.06
CLPTM1O96005 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC21.7■■□□□ 1.06
CLPTM1O96005 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.7■■□□□ 1.06
CLPTM1O96005 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CLPTM1O96005 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.7■■□□□ 1.06
CLPTM1O96005 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CLPTM1O96005 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.7■■□□□ 1.06
CLPTM1O96005 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLPTM1O96005 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CLPTM1O96005 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CLPTM1O96005 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.69■■□□□ 1.06
CLPTM1O96005 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLPTM1O96005 SLC6A10P-202ENST00000431994 2058 ntBASIC21.69■■□□□ 1.06
CLPTM1O96005 AC008813.1-201ENST00000536597 885 ntBASIC21.69■■□□□ 1.06
CLPTM1O96005 SLC25A24-204ENST00000569674 2357 ntBASIC21.69■■□□□ 1.06
CLPTM1O96005 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CLPTM1O96005 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLPTM1O96005 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC21.69■■□□□ 1.06
CLPTM1O96005 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLPTM1O96005 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLPTM1O96005 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLPTM1O96005 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLPTM1O96005 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLPTM1O96005 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLPTM1O96005 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
CLPTM1O96005 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CLPTM1O96005 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.68■■□□□ 1.06
CLPTM1O96005 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.68■■□□□ 1.06
CLPTM1O96005 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.68■■□□□ 1.06
CLPTM1O96005 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CLPTM1O96005 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLPTM1O96005 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLPTM1O96005 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLPTM1O96005 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLPTM1O96005 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLPTM1O96005 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
CLPTM1O96005 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLPTM1O96005 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC21.67■■□□□ 1.06
CLPTM1O96005 RPS2-210ENST00000530225 765 ntTSL 2 BASIC21.67■■□□□ 1.06
CLPTM1O96005 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
CLPTM1O96005 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLPTM1O96005 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.67■■□□□ 1.06
CLPTM1O96005 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CLPTM1O96005 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
CLPTM1O96005 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.66■■□□□ 1.06
CLPTM1O96005 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.66■■□□□ 1.06
CLPTM1O96005 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLPTM1O96005 AC007375.3-201ENST00000600936 2314 ntBASIC21.66■■□□□ 1.06
CLPTM1O96005 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC21.66■■□□□ 1.06
CLPTM1O96005 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
CLPTM1O96005 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLPTM1O96005 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
CLPTM1O96005 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.66■■□□□ 1.06
CLPTM1O96005 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
CLPTM1O96005 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLPTM1O96005 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CLPTM1O96005 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLPTM1O96005 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
CLPTM1O96005 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC21.65■■□□□ 1.06
CLPTM1O96005 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CLPTM1O96005 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms