Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
VPS4BO75351 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
VPS4BO75351 HES6-204ENST00000409182 863 ntTSL 2 BASIC22.67■■□□□ 1.22
VPS4BO75351 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC22.67■■□□□ 1.22
VPS4BO75351 DUX4L9-201ENST00000449051 1259 ntBASIC22.67■■□□□ 1.22
VPS4BO75351 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC22.67■■□□□ 1.22
VPS4BO75351 THA1P-201ENST00000590384 1145 ntBASIC22.67■■□□□ 1.22
VPS4BO75351 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC22.67■■□□□ 1.22
VPS4BO75351 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
VPS4BO75351 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
VPS4BO75351 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
VPS4BO75351 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
VPS4BO75351 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC22.67■■□□□ 1.22
VPS4BO75351 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
VPS4BO75351 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
VPS4BO75351 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
VPS4BO75351 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC22.66■■□□□ 1.22
VPS4BO75351 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
VPS4BO75351 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
VPS4BO75351 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
VPS4BO75351 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
VPS4BO75351 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC22.66■■□□□ 1.22
VPS4BO75351 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
VPS4BO75351 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
VPS4BO75351 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC22.65■■□□□ 1.22
VPS4BO75351 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC22.65■■□□□ 1.22
VPS4BO75351 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
VPS4BO75351 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC22.65■■□□□ 1.22
VPS4BO75351 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
VPS4BO75351 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC22.65■■□□□ 1.22
VPS4BO75351 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
VPS4BO75351 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.22
VPS4BO75351 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
VPS4BO75351 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
VPS4BO75351 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
VPS4BO75351 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC22.64■■□□□ 1.21
VPS4BO75351 KRT18P10-201ENST00000388836 1287 ntBASIC22.64■■□□□ 1.21
VPS4BO75351 HYI-210ENST00000486909 905 ntTSL 5 BASIC22.64■■□□□ 1.21
VPS4BO75351 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
VPS4BO75351 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC22.64■■□□□ 1.21
VPS4BO75351 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
VPS4BO75351 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
VPS4BO75351 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC22.63■■□□□ 1.21
VPS4BO75351 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
VPS4BO75351 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
VPS4BO75351 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
VPS4BO75351 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
VPS4BO75351 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
VPS4BO75351 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
VPS4BO75351 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC22.62■■□□□ 1.21
VPS4BO75351 AC012676.1-201ENST00000574705 1949 ntBASIC22.62■■□□□ 1.21
VPS4BO75351 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
VPS4BO75351 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
VPS4BO75351 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC22.61■■□□□ 1.21
VPS4BO75351 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
VPS4BO75351 AC004812.2-201ENST00000611079 2094 ntBASIC22.61■■□□□ 1.21
VPS4BO75351 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC22.6■■□□□ 1.21
VPS4BO75351 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
VPS4BO75351 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
VPS4BO75351 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC22.6■■□□□ 1.21
VPS4BO75351 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
VPS4BO75351 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
VPS4BO75351 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
VPS4BO75351 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
VPS4BO75351 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
VPS4BO75351 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
VPS4BO75351 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
VPS4BO75351 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC22.59■■□□□ 1.21
VPS4BO75351 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC22.59■■□□□ 1.21
VPS4BO75351 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC22.59■■□□□ 1.21
VPS4BO75351 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
VPS4BO75351 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
VPS4BO75351 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
VPS4BO75351 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC22.59■■□□□ 1.21
VPS4BO75351 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC22.59■■□□□ 1.21
VPS4BO75351 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
VPS4BO75351 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
VPS4BO75351 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
VPS4BO75351 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
VPS4BO75351 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC22.58■■□□□ 1.21
VPS4BO75351 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC22.58■■□□□ 1.21
VPS4BO75351 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC22.58■■□□□ 1.21
VPS4BO75351 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC22.58■■□□□ 1.21
VPS4BO75351 GUSBP5-201ENST00000418136 578 ntBASIC22.58■■□□□ 1.21
VPS4BO75351 AC093536.1-201ENST00000569153 554 ntBASIC22.58■■□□□ 1.21
VPS4BO75351 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
VPS4BO75351 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
VPS4BO75351 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC22.57■■□□□ 1.2
VPS4BO75351 SHD-204ENST00000599689 1729 ntTSL 5 BASIC22.57■■□□□ 1.2
VPS4BO75351 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC22.57■■□□□ 1.2
VPS4BO75351 MIR6765-201ENST00000614092 87 ntBASIC22.57■■□□□ 1.2
VPS4BO75351 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
VPS4BO75351 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC22.57■■□□□ 1.2
VPS4BO75351 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
VPS4BO75351 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
VPS4BO75351 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC22.56■■□□□ 1.2
VPS4BO75351 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
VPS4BO75351 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
VPS4BO75351 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC22.56■■□□□ 1.2
VPS4BO75351 OR2A1-AS1-204ENST00000470435 602 ntBASIC22.56■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms