Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC18.68■□□□□ 0.58
HOXA3O43365 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA3O43365 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA3O43365 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
HOXA3O43365 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA3O43365 QDPR-206ENST00000508623 601 ntTSL 3 BASIC18.68■□□□□ 0.58
HOXA3O43365 AL512631.2-201ENST00000604634 923 ntBASIC18.68■□□□□ 0.58
HOXA3O43365 AC110285.6-201ENST00000617652 491 ntBASIC18.68■□□□□ 0.58
HOXA3O43365 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC18.68■□□□□ 0.58
HOXA3O43365 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA3O43365 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC18.67■□□□□ 0.58
HOXA3O43365 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA3O43365 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA3O43365 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA3O43365 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC18.67■□□□□ 0.58
HOXA3O43365 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
HOXA3O43365 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA3O43365 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA3O43365 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA3O43365 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA3O43365 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA3O43365 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA3O43365 LBH-205ENST00000407930 756 ntTSL 2 BASIC18.66■□□□□ 0.58
HOXA3O43365 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC18.66■□□□□ 0.58
HOXA3O43365 CLTA-206ENST00000466396 695 ntTSL 2 BASIC18.66■□□□□ 0.58
HOXA3O43365 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC18.66■□□□□ 0.58
HOXA3O43365 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC18.66■□□□□ 0.58
HOXA3O43365 MIR6722-201ENST00000617286 78 ntBASIC18.66■□□□□ 0.58
HOXA3O43365 RASSF1-AS1-201ENST00000629828 790 ntBASIC18.66■□□□□ 0.58
HOXA3O43365 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA3O43365 AC092803.2-201ENST00000564287 1899 ntBASIC18.66■□□□□ 0.58
HOXA3O43365 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC18.66■□□□□ 0.58
HOXA3O43365 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA3O43365 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA3O43365 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA3O43365 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA3O43365 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC18.65■□□□□ 0.58
HOXA3O43365 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA3O43365 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC18.65■□□□□ 0.58
HOXA3O43365 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA3O43365 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA3O43365 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA3O43365 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
HOXA3O43365 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
HOXA3O43365 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HOXA3O43365 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC18.64■□□□□ 0.57
HOXA3O43365 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC18.64■□□□□ 0.57
HOXA3O43365 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
HOXA3O43365 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HOXA3O43365 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC18.63■□□□□ 0.57
HOXA3O43365 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HOXA3O43365 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
HOXA3O43365 AL121749.1-202ENST00000609313 2153 ntBASIC18.63■□□□□ 0.57
HOXA3O43365 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC18.63■□□□□ 0.57
HOXA3O43365 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
HOXA3O43365 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXA3O43365 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HOXA3O43365 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
HOXA3O43365 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC18.62■□□□□ 0.57
HOXA3O43365 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC18.62■□□□□ 0.57
HOXA3O43365 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC18.62■□□□□ 0.57
HOXA3O43365 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HOXA3O43365 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC18.62■□□□□ 0.57
HOXA3O43365 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HOXA3O43365 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXA3O43365 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXA3O43365 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXA3O43365 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXA3O43365 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXA3O43365 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
HOXA3O43365 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
HOXA3O43365 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HOXA3O43365 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HOXA3O43365 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
HOXA3O43365 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HOXA3O43365 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
HOXA3O43365 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC18.6■□□□□ 0.57
HOXA3O43365 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC18.6■□□□□ 0.57
HOXA3O43365 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXA3O43365 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXA3O43365 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXA3O43365 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC18.6■□□□□ 0.57
HOXA3O43365 AC005837.3-201ENST00000612163 286 ntBASIC18.6■□□□□ 0.57
HOXA3O43365 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXA3O43365 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HOXA3O43365 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC18.59■□□□□ 0.57
HOXA3O43365 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC18.59■□□□□ 0.57
HOXA3O43365 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXA3O43365 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HOXA3O43365 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC18.59■□□□□ 0.57
HOXA3O43365 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC18.59■□□□□ 0.57
HOXA3O43365 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HOXA3O43365 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
HOXA3O43365 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
HOXA3O43365 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HOXA3O43365 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC18.58■□□□□ 0.57
HOXA3O43365 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
HOXA3O43365 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HOXA3O43365 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC18.58■□□□□ 0.56
HOXA3O43365 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms