Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 AL009178.2-201ENST00000597278 2719 ntBASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 LINC00552-201ENST00000625151 2579 ntBASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 AC232323.1-201ENST00000540724 2099 ntBASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 REXO1L5P-201ENST00000622260 2098 ntBASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 AC109322.1-201ENST00000524499 1264 ntBASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 AL512361.1-201ENST00000554200 418 ntBASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 TBCB-211ENST00000589996 724 ntTSL 3 BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 AC011467.4-201ENST00000594891 528 ntBASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 AC023908.3-201ENST00000564211 3047 ntBASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
LIMCH1Q9UPQ0 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 TOMM22P5-201ENST00000416399 439 ntBASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 RAD18-204ENST00000418463 563 ntTSL 4 BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 RAD18-205ENST00000421052 582 ntTSL 3 BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 SNHG9-202ENST00000564014 471 ntBASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 LINC01115-203ENST00000606068 577 ntBASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 TEX28P1-201ENST00000613479 1221 ntBASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 AL138828.2-201ENST00000615812 383 ntBASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 TEX28P2-201ENST00000617764 1221 ntBASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 SPDYE12P-201ENST00000618416 771 ntBASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
LIMCH1Q9UPQ0 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC18.29■□□□□ 0.52
LIMCH1Q9UPQ0 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC18.29■□□□□ 0.52
LIMCH1Q9UPQ0 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIMCH1Q9UPQ0 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
LIMCH1Q9UPQ0 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LIMCH1Q9UPQ0 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LIMCH1Q9UPQ0 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
LIMCH1Q9UPQ0 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms