Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 DOC2GP-202ENST00000514950 1163 ntBASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
AP4E1Q9UPM8 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 CLK3P2-201ENST00000427566 1453 ntBASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 TPRX2P-201ENST00000535362 881 ntBASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
AP4E1Q9UPM8 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4E1Q9UPM8 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms