Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
TRIM4Q9C037 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM4Q9C037 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM4Q9C037 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM4Q9C037 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM4Q9C037 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
TRIM4Q9C037 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM4Q9C037 SRC-202ENST00000373558 4304 ntTSL 5 BASIC15.7■□□□□ 0.1
TRIM4Q9C037 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM4Q9C037 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM4Q9C037 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC15.69■□□□□ 0.1
TRIM4Q9C037 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC15.69■□□□□ 0.1
TRIM4Q9C037 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM4Q9C037 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM4Q9C037 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.69■□□□□ 0.1
TRIM4Q9C037 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
TRIM4Q9C037 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC15.69■□□□□ 0.1
TRIM4Q9C037 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM4Q9C037 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
TRIM4Q9C037 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM4Q9C037 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC15.69■□□□□ 0.1
TRIM4Q9C037 ARHGAP23P1-201ENST00000562773 1937 ntBASIC15.69■□□□□ 0.1
TRIM4Q9C037 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
TRIM4Q9C037 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
TRIM4Q9C037 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM4Q9C037 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC15.69■□□□□ 0.1
TRIM4Q9C037 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC15.69■□□□□ 0.1
TRIM4Q9C037 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.69■□□□□ 0.1
TRIM4Q9C037 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC15.69■□□□□ 0.1
TRIM4Q9C037 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.69■□□□□ 0.1
TRIM4Q9C037 AL592309.1-201ENST00000443127 649 ntBASIC15.69■□□□□ 0.1
TRIM4Q9C037 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC15.69■□□□□ 0.1
TRIM4Q9C037 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC15.69■□□□□ 0.1
TRIM4Q9C037 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.69■□□□□ 0.1
TRIM4Q9C037 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM4Q9C037 AC084346.2-201ENST00000607097 949 ntBASIC15.69■□□□□ 0.1
TRIM4Q9C037 AL662799.1-202ENST00000614205 422 ntBASIC15.69■□□□□ 0.1
TRIM4Q9C037 BSG-214ENST00000614867 960 ntTSL 3 BASIC15.69■□□□□ 0.1
TRIM4Q9C037 GGTLC5P-201ENST00000617623 998 ntBASIC15.69■□□□□ 0.1
TRIM4Q9C037 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.69■□□□□ 0.1
TRIM4Q9C037 TDG-209ENST00000544861 1387 ntTSL 2 BASIC15.69■□□□□ 0.1
TRIM4Q9C037 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM4Q9C037 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM4Q9C037 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.69■□□□□ 0.1
TRIM4Q9C037 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM4Q9C037 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM4Q9C037 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.69■□□□□ 0.1
TRIM4Q9C037 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM4Q9C037 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
TRIM4Q9C037 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM4Q9C037 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM4Q9C037 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM4Q9C037 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM4Q9C037 AP005117.1-202ENST00000581724 1908 ntBASIC15.68■□□□□ 0.1
TRIM4Q9C037 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM4Q9C037 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM4Q9C037 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM4Q9C037 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM4Q9C037 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM4Q9C037 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM4Q9C037 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM4Q9C037 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM4Q9C037 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM4Q9C037 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM4Q9C037 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 FAM58DP-201ENST00000428076 619 ntBASIC15.68■□□□□ 0.1
TRIM4Q9C037 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 AC069335.1-201ENST00000489972 472 ntBASIC15.68■□□□□ 0.1
TRIM4Q9C037 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 SERBP1P5-201ENST00000510079 1181 ntBASIC15.68■□□□□ 0.1
TRIM4Q9C037 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM4Q9C037 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM4Q9C037 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM4Q9C037 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM4Q9C037 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM4Q9C037 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
TRIM4Q9C037 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.68■□□□□ 0.1
TRIM4Q9C037 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM4Q9C037 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM4Q9C037 AC117489.1-201ENST00000625169 3217 ntBASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms