Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 AL133267.1-201ENST00000398220 340 ntBASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 AC099336.1-201ENST00000417053 1171 ntBASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 USB1-202ENST00000423271 1217 ntTSL 2 BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 FO681548.1-201ENST00000455617 1132 ntBASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 PACS1-203ENST00000524815 628 ntTSL 4 BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 PTP4A1P2-201ENST00000546033 454 ntBASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 TUBB1P2-201ENST00000422712 1306 ntBASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 TUBB1P1-201ENST00000503144 1300 ntBASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 OR6D1P-203ENST00000641209 4860 ntBASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 AC134915.1-201ENST00000426461 574 ntBASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 C18orf15-201ENST00000623680 2534 ntBASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RPAP1Q9BWH6 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC18.77■□□□□ 0.6
RPAP1Q9BWH6 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPAP1Q9BWH6 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPAP1Q9BWH6 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC18.77■□□□□ 0.6
RPAP1Q9BWH6 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RPAP1Q9BWH6 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPAP1Q9BWH6 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RPAP1Q9BWH6 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RPAP1Q9BWH6 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC18.77■□□□□ 0.6
RPAP1Q9BWH6 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC18.77■□□□□ 0.6
RPAP1Q9BWH6 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPAP1Q9BWH6 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC18.77■□□□□ 0.6
RPAP1Q9BWH6 AC099063.4-201ENST00000641099 1602 ntBASIC18.77■□□□□ 0.6
RPAP1Q9BWH6 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPAP1Q9BWH6 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPAP1Q9BWH6 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RPAP1Q9BWH6 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC18.77■□□□□ 0.6
RPAP1Q9BWH6 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPAP1Q9BWH6 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPAP1Q9BWH6 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPAP1Q9BWH6 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms