Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LRCH3Q96II8 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LRCH3Q96II8 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
LRCH3Q96II8 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LRCH3Q96II8 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.73■□□□□ 0.27
LRCH3Q96II8 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.73■□□□□ 0.27
LRCH3Q96II8 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
LRCH3Q96II8 MVK-214ENST00000629016 1591 ntTSL 5 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LRCH3Q96II8 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LRCH3Q96II8 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
LRCH3Q96II8 TK1-203ENST00000588734 1681 ntTSL 2 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LRCH3Q96II8 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LRCH3Q96II8 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LRCH3Q96II8 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LRCH3Q96II8 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
LRCH3Q96II8 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LRCH3Q96II8 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LRCH3Q96II8 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LRCH3Q96II8 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 AL353637.1-201ENST00000451571 732 ntBASIC16.72■□□□□ 0.27
LRCH3Q96II8 AC079112.1-201ENST00000454972 939 ntBASIC16.72■□□□□ 0.27
LRCH3Q96II8 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 REEP5-205ENST00000504247 480 ntTSL 5 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 MIR4649-201ENST00000582839 64 ntBASIC16.72■□□□□ 0.27
LRCH3Q96II8 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LRCH3Q96II8 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LRCH3Q96II8 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LRCH3Q96II8 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LRCH3Q96II8 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
LRCH3Q96II8 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
LRCH3Q96II8 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LRCH3Q96II8 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LRCH3Q96II8 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
LRCH3Q96II8 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LRCH3Q96II8 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LRCH3Q96II8 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.71■□□□□ 0.27
LRCH3Q96II8 AL121723.1-201ENST00000445194 1519 ntBASIC16.71■□□□□ 0.27
LRCH3Q96II8 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LRCH3Q96II8 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
LRCH3Q96II8 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
LRCH3Q96II8 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.71■□□□□ 0.27
LRCH3Q96II8 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
LRCH3Q96II8 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LRCH3Q96II8 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LRCH3Q96II8 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LRCH3Q96II8 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
LRCH3Q96II8 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC16.71■□□□□ 0.27
LRCH3Q96II8 AC021723.1-201ENST00000486306 515 ntBASIC16.71■□□□□ 0.27
LRCH3Q96II8 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LRCH3Q96II8 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC16.71■□□□□ 0.27
LRCH3Q96II8 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC16.71■□□□□ 0.27
LRCH3Q96II8 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
LRCH3Q96II8 AC242376.1-201ENST00000559033 726 ntBASIC16.71■□□□□ 0.27
LRCH3Q96II8 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC16.71■□□□□ 0.27
LRCH3Q96II8 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC16.71■□□□□ 0.27
LRCH3Q96II8 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC16.71■□□□□ 0.27
LRCH3Q96II8 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC16.71■□□□□ 0.27
LRCH3Q96II8 AC026790.2-201ENST00000606282 430 ntBASIC16.71■□□□□ 0.27
LRCH3Q96II8 ETV2-207ENST00000619399 994 ntTSL 5 BASIC16.71■□□□□ 0.27
LRCH3Q96II8 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LRCH3Q96II8 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LRCH3Q96II8 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LRCH3Q96II8 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC16.71■□□□□ 0.27
LRCH3Q96II8 AL157791.1-201ENST00000553667 1699 ntBASIC16.71■□□□□ 0.27
LRCH3Q96II8 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LRCH3Q96II8 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
LRCH3Q96II8 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LRCH3Q96II8 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.71■□□□□ 0.26
LRCH3Q96II8 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
LRCH3Q96II8 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms