Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 SPTLC1P1-201ENST00000447199 261 ntBASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 AC004066.1-201ENST00000502488 802 ntBASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 AC099568.2-201ENST00000609194 695 ntBASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SHROOM3Q8TF72 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 RN7SL837P-201ENST00000463010 287 ntBASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 FAM86LP-201ENST00000478302 853 ntBASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 CD81-207ENST00000481687 890 ntTSL 2 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 TP53TG3HP-202ENST00000569755 579 ntBASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 AC112492.5-201ENST00000421897 457 ntBASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 GHSR-202ENST00000427970 912 ntBASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 RHOA-206ENST00000454011 889 ntTSL 2 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 AC123567.1-201ENST00000548294 1261 ntBASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 AC120045.2-201ENST00000567334 178 ntBASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 POR-201ENST00000394893 2532 ntTSL 5 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 MROH4P-201ENST00000431302 1578 ntBASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
SHROOM3Q8TF72 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
SHROOM3Q8TF72 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms