Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
SKA3Q8IX90 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC13.82□□□□□ -0.2
SKA3Q8IX90 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
SKA3Q8IX90 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC13.82□□□□□ -0.2
SKA3Q8IX90 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC13.82□□□□□ -0.2
SKA3Q8IX90 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC13.82□□□□□ -0.2
SKA3Q8IX90 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC13.82□□□□□ -0.2
SKA3Q8IX90 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
SKA3Q8IX90 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC13.82□□□□□ -0.2
SKA3Q8IX90 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC13.82□□□□□ -0.2
SKA3Q8IX90 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
SKA3Q8IX90 USP40-206ENST00000443711 628 ntTSL 2 BASIC13.82□□□□□ -0.2
SKA3Q8IX90 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC13.82□□□□□ -0.2
SKA3Q8IX90 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC13.82□□□□□ -0.2
SKA3Q8IX90 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 AQP6-203ENST00000551733 849 ntTSL 3 BASIC13.82□□□□□ -0.2
SKA3Q8IX90 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 LINC01115-203ENST00000606068 577 ntBASIC13.82□□□□□ -0.2
SKA3Q8IX90 TEX48-202ENST00000612244 662 ntTSL 3 BASIC13.82□□□□□ -0.2
SKA3Q8IX90 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC13.82□□□□□ -0.2
SKA3Q8IX90 AF228730.6-201ENST00000641497 218 ntBASIC13.82□□□□□ -0.2
SKA3Q8IX90 AC084121.3-201ENST00000641716 218 ntBASIC13.82□□□□□ -0.2
SKA3Q8IX90 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 AC022144.1-201ENST00000602255 1580 ntBASIC13.82□□□□□ -0.2
SKA3Q8IX90 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 AC020658.6-201ENST00000623564 1870 ntBASIC13.82□□□□□ -0.2
SKA3Q8IX90 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
SKA3Q8IX90 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SKA3Q8IX90 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC13.82□□□□□ -0.2
SKA3Q8IX90 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SKA3Q8IX90 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SKA3Q8IX90 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SKA3Q8IX90 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
SKA3Q8IX90 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SKA3Q8IX90 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
SKA3Q8IX90 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SKA3Q8IX90 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SKA3Q8IX90 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SKA3Q8IX90 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SKA3Q8IX90 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SKA3Q8IX90 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SKA3Q8IX90 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SKA3Q8IX90 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
SKA3Q8IX90 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
SKA3Q8IX90 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SKA3Q8IX90 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 KRT18P64-201ENST00000434946 1219 ntBASIC13.81□□□□□ -0.2
SKA3Q8IX90 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 RNA5SP421-201ENST00000516864 134 ntBASIC13.81□□□□□ -0.2
SKA3Q8IX90 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 RAB35-202ENST00000534951 939 ntTSL 2 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 AC004461.2-201ENST00000629517 803 ntBASIC13.81□□□□□ -0.2
SKA3Q8IX90 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SKA3Q8IX90 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SKA3Q8IX90 AL137784.3-201ENST00000623858 2288 ntBASIC13.81□□□□□ -0.2
SKA3Q8IX90 AC009090.5-201ENST00000624886 2285 ntBASIC13.81□□□□□ -0.2
SKA3Q8IX90 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
SKA3Q8IX90 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SKA3Q8IX90 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SKA3Q8IX90 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
SKA3Q8IX90 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SKA3Q8IX90 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
SKA3Q8IX90 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms