Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 RPS9P1-201ENST00000419943 583 ntBASIC10.57□□□□□ -0.72
CSMD3Q7Z407 NOC2LP1-201ENST00000450578 752 ntBASIC10.57□□□□□ -0.72
CSMD3Q7Z407 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 AL022344.2-201ENST00000568976 968 ntBASIC10.57□□□□□ -0.72
CSMD3Q7Z407 RN7SL596P-201ENST00000582123 288 ntBASIC10.57□□□□□ -0.72
CSMD3Q7Z407 AL132994.2-201ENST00000603120 687 ntBASIC10.57□□□□□ -0.72
CSMD3Q7Z407 AC138466.3-201ENST00000619983 221 ntBASIC10.57□□□□□ -0.72
CSMD3Q7Z407 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 LRRC59-203ENST00000576448 1531 ntBASIC10.57□□□□□ -0.72
CSMD3Q7Z407 MVK-214ENST00000629016 1591 ntTSL 5 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 SUPT20HL2-201ENST00000486479 2409 ntBASIC10.57□□□□□ -0.72
CSMD3Q7Z407 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 RN7SKP175-201ENST00000408472 289 ntBASIC10.57□□□□□ -0.72
CSMD3Q7Z407 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 AC106794.1-201ENST00000506935 792 ntBASIC10.57□□□□□ -0.72
CSMD3Q7Z407 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CSMD3Q7Z407 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC10.56□□□□□ -0.72
CSMD3Q7Z407 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 AC055811.4-201ENST00000624039 1754 ntBASIC10.56□□□□□ -0.72
CSMD3Q7Z407 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 AC074138.1-201ENST00000611182 1303 ntBASIC10.56□□□□□ -0.72
CSMD3Q7Z407 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 MIR557-201ENST00000385239 98 ntBASIC10.56□□□□□ -0.72
CSMD3Q7Z407 AL357563.1-201ENST00000404728 395 ntBASIC10.56□□□□□ -0.72
CSMD3Q7Z407 AC079112.1-201ENST00000454972 939 ntBASIC10.56□□□□□ -0.72
CSMD3Q7Z407 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC10.56□□□□□ -0.72
CSMD3Q7Z407 AC021723.1-201ENST00000486306 515 ntBASIC10.56□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms