Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC18.34■□□□□ 0.53
SYNE3Q6ZMZ3 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SYNE3Q6ZMZ3 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SYNE3Q6ZMZ3 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC18.33■□□□□ 0.53
SYNE3Q6ZMZ3 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SYNE3Q6ZMZ3 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SYNE3Q6ZMZ3 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SYNE3Q6ZMZ3 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC18.33■□□□□ 0.53
SYNE3Q6ZMZ3 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC18.33■□□□□ 0.53
SYNE3Q6ZMZ3 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC18.33■□□□□ 0.53
SYNE3Q6ZMZ3 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SYNE3Q6ZMZ3 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SYNE3Q6ZMZ3 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC18.33■□□□□ 0.53
SYNE3Q6ZMZ3 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
SYNE3Q6ZMZ3 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SYNE3Q6ZMZ3 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC18.33■□□□□ 0.53
SYNE3Q6ZMZ3 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SYNE3Q6ZMZ3 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 RASL12-203ENST00000434605 982 ntTSL 2 BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 API5-202ENST00000420461 2009 ntTSL 2 BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 GSN-206ENST00000394353 2311 ntTSL 2 BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SYNE3Q6ZMZ3 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 KRT18P43-201ENST00000469825 1281 ntBASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 AC015910.1-201ENST00000579400 975 ntBASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 AL355385.1-201ENST00000606123 409 ntBASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 RNA5-8SN1-201ENST00000610460 153 ntBASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 RNA5-8SN5-202ENST00000612463 153 ntBASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 RNA5-8SN4-201ENST00000613359 153 ntBASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 RNA5-8SN5-201ENST00000619471 153 ntBASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SYNE3Q6ZMZ3 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SYNE3Q6ZMZ3 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SYNE3Q6ZMZ3 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SYNE3Q6ZMZ3 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
SYNE3Q6ZMZ3 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC18.31■□□□□ 0.52
SYNE3Q6ZMZ3 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC18.31■□□□□ 0.52
SYNE3Q6ZMZ3 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms