Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 AC074138.1-201ENST00000611182 1303 ntBASIC10.15□□□□□ -0.78
VPS13DQ5THJ4 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC10.15□□□□□ -0.78
VPS13DQ5THJ4 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC10.15□□□□□ -0.78
VPS13DQ5THJ4 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
VPS13DQ5THJ4 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
VPS13DQ5THJ4 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC10.15□□□□□ -0.78
VPS13DQ5THJ4 AC234644.1-201ENST00000406065 370 ntBASIC10.15□□□□□ -0.78
VPS13DQ5THJ4 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC10.15□□□□□ -0.78
VPS13DQ5THJ4 FAM58BP-201ENST00000439056 645 ntBASIC10.15□□□□□ -0.78
VPS13DQ5THJ4 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
VPS13DQ5THJ4 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
VPS13DQ5THJ4 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC10.15□□□□□ -0.78
VPS13DQ5THJ4 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC10.15□□□□□ -0.78
VPS13DQ5THJ4 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC10.15□□□□□ -0.78
VPS13DQ5THJ4 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC10.15□□□□□ -0.78
VPS13DQ5THJ4 AC012044.1-201ENST00000603431 297 ntBASIC10.15□□□□□ -0.78
VPS13DQ5THJ4 AC005041.3-201ENST00000606287 649 ntBASIC10.15□□□□□ -0.78
VPS13DQ5THJ4 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC10.15□□□□□ -0.78
VPS13DQ5THJ4 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC10.15□□□□□ -0.79
VPS13DQ5THJ4 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.79
VPS13DQ5THJ4 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
VPS13DQ5THJ4 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
VPS13DQ5THJ4 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
VPS13DQ5THJ4 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
VPS13DQ5THJ4 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
VPS13DQ5THJ4 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
VPS13DQ5THJ4 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.79
VPS13DQ5THJ4 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC10.15□□□□□ -0.79
VPS13DQ5THJ4 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC10.15□□□□□ -0.79
VPS13DQ5THJ4 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 EIF5AP2-201ENST00000585668 1047 ntBASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 AC084781.1-201ENST00000613737 656 ntBASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 MIR3677-201ENST00000578964 60 ntBASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 MIR4522-201ENST00000584932 87 ntBASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 BLK-205ENST00000529894 2017 ntTSL 5 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 AL357563.1-201ENST00000404728 395 ntBASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 ISCA2P1-201ENST00000425548 448 ntBASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 AC078875.1-201ENST00000431907 724 ntBASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 AC098935.1-201ENST00000446057 611 ntBASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 COX6A1P2-201ENST00000620597 330 ntBASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 DDX5-235ENST00000630471 473 ntTSL 4 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 CYP51A1P3-201ENST00000400072 1428 ntBASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 AL513523.2-202ENST00000427283 2040 ntBASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
VPS13DQ5THJ4 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC10.13□□□□□ -0.79
VPS13DQ5THJ4 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC10.13□□□□□ -0.79
VPS13DQ5THJ4 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
VPS13DQ5THJ4 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC10.13□□□□□ -0.79
Retrieved 100 of 98,524 protein–RNA pairs in 139.4 ms