Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC13.36□□□□□ -0.27
ABCA4P78363 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC13.36□□□□□ -0.27
ABCA4P78363 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC13.36□□□□□ -0.27
ABCA4P78363 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC13.36□□□□□ -0.27
ABCA4P78363 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC13.36□□□□□ -0.27
ABCA4P78363 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
ABCA4P78363 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC13.36□□□□□ -0.27
ABCA4P78363 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC13.36□□□□□ -0.27
ABCA4P78363 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
ABCA4P78363 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC13.36□□□□□ -0.27
ABCA4P78363 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 FTLP1-201ENST00000449155 526 ntBASIC13.36□□□□□ -0.27
ABCA4P78363 EIF4HP1-201ENST00000453115 687 ntBASIC13.36□□□□□ -0.27
ABCA4P78363 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC13.36□□□□□ -0.27
ABCA4P78363 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC13.36□□□□□ -0.27
ABCA4P78363 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC13.36□□□□□ -0.27
ABCA4P78363 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC13.36□□□□□ -0.27
ABCA4P78363 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
ABCA4P78363 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC13.36□□□□□ -0.27
ABCA4P78363 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
ABCA4P78363 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC13.36□□□□□ -0.27
ABCA4P78363 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
ABCA4P78363 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC13.36□□□□□ -0.27
ABCA4P78363 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC13.36□□□□□ -0.27
ABCA4P78363 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
ABCA4P78363 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC13.36□□□□□ -0.27
ABCA4P78363 UPF3AP2-201ENST00000457924 1132 ntBASIC13.36□□□□□ -0.27
ABCA4P78363 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC13.36□□□□□ -0.27
ABCA4P78363 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC13.36□□□□□ -0.27
ABCA4P78363 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
ABCA4P78363 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC13.36□□□□□ -0.27
ABCA4P78363 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC13.35□□□□□ -0.27
ABCA4P78363 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC13.35□□□□□ -0.27
ABCA4P78363 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
ABCA4P78363 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
ABCA4P78363 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
ABCA4P78363 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC13.35□□□□□ -0.27
ABCA4P78363 NKILA-202ENST00000614771 2598 ntBASIC13.35□□□□□ -0.27
ABCA4P78363 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
ABCA4P78363 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC13.35□□□□□ -0.27
ABCA4P78363 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
ABCA4P78363 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
ABCA4P78363 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
ABCA4P78363 AC011477.6-201ENST00000604980 1927 ntBASIC13.35□□□□□ -0.27
ABCA4P78363 AC084018.2-201ENST00000613093 2607 ntBASIC13.35□□□□□ -0.27
ABCA4P78363 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC13.35□□□□□ -0.27
ABCA4P78363 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
ABCA4P78363 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
ABCA4P78363 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
ABCA4P78363 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
ABCA4P78363 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
ABCA4P78363 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
ABCA4P78363 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC13.35□□□□□ -0.27
ABCA4P78363 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
ABCA4P78363 GGCT-203ENST00000409144 836 ntTSL 2 BASIC13.35□□□□□ -0.27
ABCA4P78363 TISP43-201ENST00000409793 538 ntTSL 4 BASIC13.35□□□□□ -0.27
ABCA4P78363 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC13.35□□□□□ -0.27
ABCA4P78363 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC13.35□□□□□ -0.27
ABCA4P78363 Z93015.1-201ENST00000451718 390 ntBASIC13.35□□□□□ -0.27
ABCA4P78363 AL591846.1-201ENST00000451736 433 ntBASIC13.35□□□□□ -0.27
ABCA4P78363 REEP1-202ENST00000453231 940 ntTSL 2 BASIC13.35□□□□□ -0.27
ABCA4P78363 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC13.35□□□□□ -0.27
ABCA4P78363 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
ABCA4P78363 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC13.35□□□□□ -0.27
ABCA4P78363 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
ABCA4P78363 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
ABCA4P78363 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
ABCA4P78363 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC13.35□□□□□ -0.27
ABCA4P78363 MIR4313-201ENST00000580760 101 ntBASIC13.35□□□□□ -0.27
ABCA4P78363 AC104982.3-201ENST00000581995 514 ntBASIC13.35□□□□□ -0.27
ABCA4P78363 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.27
ABCA4P78363 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
ABCA4P78363 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
ABCA4P78363 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms