Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AC074044.1-201ENST00000609673 707 ntBASIC16.07■□□□□ 0.16
NEK3P51956 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.07■□□□□ 0.16
NEK3P51956 AC005702.4-201ENST00000618393 416 ntBASIC16.07■□□□□ 0.16
NEK3P51956 AC004461.2-201ENST00000629517 803 ntBASIC16.07■□□□□ 0.16
NEK3P51956 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC16.07■□□□□ 0.16
NEK3P51956 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
NEK3P51956 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
NEK3P51956 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
NEK3P51956 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.07■□□□□ 0.16
NEK3P51956 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NEK3P51956 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NEK3P51956 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NEK3P51956 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
NEK3P51956 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
NEK3P51956 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC16.07■□□□□ 0.16
NEK3P51956 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
NEK3P51956 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NEK3P51956 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
NEK3P51956 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
NEK3P51956 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NEK3P51956 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
NEK3P51956 AC092127.1-201ENST00000567093 3455 ntBASIC16.06■□□□□ 0.16
NEK3P51956 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NEK3P51956 AC091951.1-201ENST00000512854 2465 ntBASIC16.06■□□□□ 0.16
NEK3P51956 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.06■□□□□ 0.16
NEK3P51956 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
NEK3P51956 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NEK3P51956 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NEK3P51956 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NEK3P51956 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.06■□□□□ 0.16
NEK3P51956 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.06■□□□□ 0.16
NEK3P51956 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
NEK3P51956 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
NEK3P51956 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
NEK3P51956 AC007541.1-201ENST00000570282 1469 ntBASIC16.06■□□□□ 0.16
NEK3P51956 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NEK3P51956 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
NEK3P51956 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NEK3P51956 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NEK3P51956 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
NEK3P51956 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
NEK3P51956 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
NEK3P51956 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
NEK3P51956 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.06■□□□□ 0.16
NEK3P51956 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NEK3P51956 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NEK3P51956 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC16.06■□□□□ 0.16
NEK3P51956 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.06■□□□□ 0.16
NEK3P51956 SPDYE18-201ENST00000510091 1050 ntBASIC16.06■□□□□ 0.16
NEK3P51956 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.06■□□□□ 0.16
NEK3P51956 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC16.06■□□□□ 0.16
NEK3P51956 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.06■□□□□ 0.16
NEK3P51956 AL662799.1-202ENST00000614205 422 ntBASIC16.06■□□□□ 0.16
NEK3P51956 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC16.06■□□□□ 0.16
NEK3P51956 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NEK3P51956 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.06■□□□□ 0.16
NEK3P51956 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
NEK3P51956 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NEK3P51956 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC16.06■□□□□ 0.16
NEK3P51956 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.06■□□□□ 0.16
NEK3P51956 C18orf15-201ENST00000623680 2534 ntBASIC16.06■□□□□ 0.16
NEK3P51956 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.06■□□□□ 0.16
NEK3P51956 AC063926.3-201ENST00000624734 5658 ntBASIC16.06■□□□□ 0.16
NEK3P51956 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
NEK3P51956 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NEK3P51956 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NEK3P51956 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NEK3P51956 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
NEK3P51956 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
NEK3P51956 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.06■□□□□ 0.16
NEK3P51956 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NEK3P51956 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.05■□□□□ 0.16
NEK3P51956 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
NEK3P51956 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NEK3P51956 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NEK3P51956 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NEK3P51956 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
NEK3P51956 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NEK3P51956 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.05■□□□□ 0.16
NEK3P51956 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NEK3P51956 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NEK3P51956 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.05■□□□□ 0.16
NEK3P51956 BNIP3P1-202ENST00000550043 1585 ntBASIC16.05■□□□□ 0.16
NEK3P51956 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.05■□□□□ 0.16
NEK3P51956 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NEK3P51956 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NEK3P51956 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC16.05■□□□□ 0.16
NEK3P51956 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.05■□□□□ 0.16
NEK3P51956 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
NEK3P51956 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NEK3P51956 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NEK3P51956 GOLGA8DP-202ENST00000341390 2184 ntBASIC16.05■□□□□ 0.16
NEK3P51956 SPDYE19P-201ENST00000338590 713 ntBASIC16.05■□□□□ 0.16
NEK3P51956 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC16.05■□□□□ 0.16
NEK3P51956 COPE-202ENST00000349893 948 ntTSL 2 BASIC16.05■□□□□ 0.16
NEK3P51956 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.05■□□□□ 0.16
NEK3P51956 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NEK3P51956 OSM-203ENST00000403463 464 ntTSL 3 BASIC16.05■□□□□ 0.16
NEK3P51956 DFFBP1-201ENST00000433250 979 ntBASIC16.05■□□□□ 0.16
NEK3P51956 PNKD-204ENST00000436005 978 ntTSL 5 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms