Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
RFX3P48380 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFX3P48380 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFX3P48380 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFX3P48380 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFX3P48380 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFX3P48380 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
RFX3P48380 RPL37AP1-201ENST00000412502 279 ntBASIC14.69□□□□□ -0.06
RFX3P48380 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.69□□□□□ -0.06
RFX3P48380 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC14.69□□□□□ -0.06
RFX3P48380 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC14.69□□□□□ -0.06
RFX3P48380 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.69□□□□□ -0.06
RFX3P48380 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.69□□□□□ -0.06
RFX3P48380 AL138828.2-201ENST00000615812 383 ntBASIC14.69□□□□□ -0.06
RFX3P48380 AC093512.1-201ENST00000617969 520 ntBASIC14.69□□□□□ -0.06
RFX3P48380 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
RFX3P48380 LCK-206ENST00000373564 2137 ntTSL 5 BASIC14.69□□□□□ -0.06
RFX3P48380 KRT8P12-202ENST00000472924 1397 ntBASIC14.69□□□□□ -0.06
RFX3P48380 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC14.69□□□□□ -0.06
RFX3P48380 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
RFX3P48380 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC14.69□□□□□ -0.06
RFX3P48380 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
RFX3P48380 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFX3P48380 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFX3P48380 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
RFX3P48380 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
RFX3P48380 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFX3P48380 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFX3P48380 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.69□□□□□ -0.06
RFX3P48380 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC14.68□□□□□ -0.06
RFX3P48380 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.68□□□□□ -0.06
RFX3P48380 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX3P48380 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX3P48380 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX3P48380 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.68□□□□□ -0.06
RFX3P48380 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX3P48380 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX3P48380 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX3P48380 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX3P48380 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC14.68□□□□□ -0.06
RFX3P48380 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.68□□□□□ -0.06
RFX3P48380 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX3P48380 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
RFX3P48380 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX3P48380 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX3P48380 GRN-214ENST00000589265 1632 ntTSL 5 BASIC14.68□□□□□ -0.06
RFX3P48380 FAM45BP-202ENST00000592932 1624 ntBASIC14.68□□□□□ -0.06
RFX3P48380 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX3P48380 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
RFX3P48380 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX3P48380 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
RFX3P48380 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
RFX3P48380 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC14.68□□□□□ -0.06
RFX3P48380 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC14.68□□□□□ -0.06
RFX3P48380 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
RFX3P48380 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX3P48380 DUX4L27-201ENST00000554796 1261 ntBASIC14.68□□□□□ -0.06
RFX3P48380 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
RFX3P48380 AC140878.1-201ENST00000565277 250 ntBASIC14.68□□□□□ -0.06
RFX3P48380 MIR4313-201ENST00000580760 101 ntBASIC14.68□□□□□ -0.06
RFX3P48380 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC14.68□□□□□ -0.06
RFX3P48380 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC14.68□□□□□ -0.06
RFX3P48380 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX3P48380 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX3P48380 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.68□□□□□ -0.06
RFX3P48380 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX3P48380 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
RFX3P48380 FO538757.1-201ENST00000623083 1397 ntBASIC14.68□□□□□ -0.06
RFX3P48380 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX3P48380 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX3P48380 AC009090.5-201ENST00000624886 2285 ntBASIC14.68□□□□□ -0.06
RFX3P48380 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX3P48380 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.68□□□□□ -0.06
RFX3P48380 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX3P48380 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.68□□□□□ -0.06
RFX3P48380 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RFX3P48380 AC087481.3-201ENST00000602886 1894 ntBASIC14.67□□□□□ -0.06
RFX3P48380 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX3P48380 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX3P48380 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX3P48380 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
RFX3P48380 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX3P48380 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
RFX3P48380 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX3P48380 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC14.67□□□□□ -0.06
RFX3P48380 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
RFX3P48380 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC14.67□□□□□ -0.06
RFX3P48380 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
RFX3P48380 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX3P48380 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC14.67□□□□□ -0.06
RFX3P48380 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
RFX3P48380 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.67□□□□□ -0.06
RFX3P48380 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
RFX3P48380 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RFX3P48380 PNMT-202ENST00000394246 821 ntTSL 2 BASIC14.67□□□□□ -0.06
RFX3P48380 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.67□□□□□ -0.06
RFX3P48380 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.67□□□□□ -0.06
RFX3P48380 AL080243.2-201ENST00000418783 582 ntBASIC14.67□□□□□ -0.06
RFX3P48380 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC14.67□□□□□ -0.06
RFX3P48380 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 121.4 ms