Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.28□□□□□ -0.12
RFC3P40938 AC010491.1-201ENST00000563101 2797 ntBASIC14.28□□□□□ -0.12
RFC3P40938 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC14.28□□□□□ -0.12
RFC3P40938 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
RFC3P40938 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.28□□□□□ -0.12
RFC3P40938 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
RFC3P40938 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.28□□□□□ -0.12
RFC3P40938 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC14.28□□□□□ -0.12
RFC3P40938 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.28□□□□□ -0.12
RFC3P40938 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC14.28□□□□□ -0.12
RFC3P40938 TOMM22P5-201ENST00000416399 439 ntBASIC14.28□□□□□ -0.12
RFC3P40938 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
RFC3P40938 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC14.28□□□□□ -0.12
RFC3P40938 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.28□□□□□ -0.12
RFC3P40938 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC14.28□□□□□ -0.12
RFC3P40938 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.28□□□□□ -0.12
RFC3P40938 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC14.28□□□□□ -0.12
RFC3P40938 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.28□□□□□ -0.12
RFC3P40938 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC14.28□□□□□ -0.12
RFC3P40938 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14.28□□□□□ -0.12
RFC3P40938 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.28□□□□□ -0.12
RFC3P40938 AL512343.1-201ENST00000605837 169 ntBASIC14.28□□□□□ -0.12
RFC3P40938 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.28□□□□□ -0.12
RFC3P40938 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 RPSAP52-203ENST00000622976 1023 ntBASIC14.28□□□□□ -0.12
RFC3P40938 PAUPAR-201ENST00000630360 2965 ntBASIC14.28□□□□□ -0.12
RFC3P40938 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.28□□□□□ -0.12
RFC3P40938 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC14.28□□□□□ -0.12
RFC3P40938 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.28□□□□□ -0.12
RFC3P40938 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
RFC3P40938 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
RFC3P40938 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
RFC3P40938 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFC3P40938 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RFC3P40938 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RFC3P40938 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
RFC3P40938 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
RFC3P40938 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RFC3P40938 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RFC3P40938 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
RFC3P40938 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RFC3P40938 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
RFC3P40938 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC14.27□□□□□ -0.12
RFC3P40938 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RFC3P40938 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
RFC3P40938 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RFC3P40938 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC14.27□□□□□ -0.12
RFC3P40938 MTHFR-217ENST00000641820 1569 ntBASIC14.27□□□□□ -0.12
RFC3P40938 AL121723.1-201ENST00000445194 1519 ntBASIC14.27□□□□□ -0.12
RFC3P40938 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC14.27□□□□□ -0.12
RFC3P40938 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC14.27□□□□□ -0.12
RFC3P40938 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
RFC3P40938 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
RFC3P40938 AC092384.3-202ENST00000564646 2873 ntBASIC14.27□□□□□ -0.12
RFC3P40938 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC14.27□□□□□ -0.12
RFC3P40938 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RFC3P40938 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RFC3P40938 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
RFC3P40938 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
RFC3P40938 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RFC3P40938 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.27□□□□□ -0.13
RFC3P40938 AC134915.1-201ENST00000426461 574 ntBASIC14.27□□□□□ -0.13
RFC3P40938 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC14.27□□□□□ -0.13
RFC3P40938 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.27□□□□□ -0.13
RFC3P40938 AC234783.1-201ENST00000441761 496 ntBASIC14.27□□□□□ -0.13
RFC3P40938 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.27□□□□□ -0.13
RFC3P40938 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.27□□□□□ -0.13
RFC3P40938 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RFC3P40938 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RFC3P40938 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.27□□□□□ -0.13
RFC3P40938 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms