Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHMT2P34897 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
SHMT2P34897 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
SHMT2P34897 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHMT2P34897 AC087499.6-201ENST00000411576 835 ntBASIC15.26■□□□□ 0.03
SHMT2P34897 AL589987.1-201ENST00000453380 819 ntBASIC15.26■□□□□ 0.03
SHMT2P34897 LHX6-205ENST00000464484 666 ntTSL 2 BASIC15.26■□□□□ 0.03
SHMT2P34897 CD81-207ENST00000481687 890 ntTSL 2 BASIC15.26■□□□□ 0.03
SHMT2P34897 COQ6-210ENST00000554920 649 ntTSL 3 BASIC15.26■□□□□ 0.03
SHMT2P34897 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC15.26■□□□□ 0.03
SHMT2P34897 RRP7BP-205ENST00000566851 833 ntBASIC15.26■□□□□ 0.03
SHMT2P34897 AC004790.1-201ENST00000612686 536 ntBASIC15.26■□□□□ 0.03
SHMT2P34897 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHMT2P34897 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC15.26■□□□□ 0.03
SHMT2P34897 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.26■□□□□ 0.03
SHMT2P34897 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.26■□□□□ 0.03
SHMT2P34897 CICP13-201ENST00000422015 2789 ntBASIC15.26■□□□□ 0.03
SHMT2P34897 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHMT2P34897 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SHMT2P34897 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHMT2P34897 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHMT2P34897 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHMT2P34897 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHMT2P34897 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHMT2P34897 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHMT2P34897 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHMT2P34897 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
SHMT2P34897 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHMT2P34897 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.26■□□□□ 0.03
SHMT2P34897 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
SHMT2P34897 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.26■□□□□ 0.03
SHMT2P34897 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHMT2P34897 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
SHMT2P34897 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
SHMT2P34897 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC15.25■□□□□ 0.03
SHMT2P34897 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.25■□□□□ 0.03
SHMT2P34897 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.25■□□□□ 0.03
SHMT2P34897 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHMT2P34897 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHMT2P34897 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHMT2P34897 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SHMT2P34897 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHMT2P34897 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.25■□□□□ 0.03
SHMT2P34897 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHMT2P34897 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHMT2P34897 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SHMT2P34897 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHMT2P34897 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
SHMT2P34897 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.25■□□□□ 0.03
SHMT2P34897 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHMT2P34897 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHMT2P34897 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHMT2P34897 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHMT2P34897 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SHMT2P34897 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHMT2P34897 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SHMT2P34897 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
SHMT2P34897 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC15.25■□□□□ 0.03
SHMT2P34897 RHOA-206ENST00000454011 889 ntTSL 2 BASIC15.25■□□□□ 0.03
SHMT2P34897 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC15.25■□□□□ 0.03
SHMT2P34897 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC15.25■□□□□ 0.03
SHMT2P34897 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC15.25■□□□□ 0.03
SHMT2P34897 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SHMT2P34897 AC190387.1-201ENST00000551683 408 ntBASIC15.25■□□□□ 0.03
SHMT2P34897 AC023310.3-201ENST00000557027 670 ntBASIC15.25■□□□□ 0.03
SHMT2P34897 AC100756.1-201ENST00000562736 682 ntBASIC15.25■□□□□ 0.03
SHMT2P34897 RARRES2P5-201ENST00000564013 466 ntBASIC15.25■□□□□ 0.03
SHMT2P34897 AC138749.3-201ENST00000567691 622 ntBASIC15.25■□□□□ 0.03
SHMT2P34897 AC099568.2-201ENST00000609194 695 ntBASIC15.25■□□□□ 0.03
SHMT2P34897 AC116165.1-201ENST00000611806 668 ntBASIC15.25■□□□□ 0.03
SHMT2P34897 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SHMT2P34897 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHMT2P34897 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SHMT2P34897 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.25■□□□□ 0.03
SHMT2P34897 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SHMT2P34897 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SHMT2P34897 AC138969.3-201ENST00000546612 1459 ntBASIC15.25■□□□□ 0.03
SHMT2P34897 AC138932.2-201ENST00000548268 1459 ntBASIC15.25■□□□□ 0.03
SHMT2P34897 AC126755.4-201ENST00000549796 1459 ntBASIC15.25■□□□□ 0.03
SHMT2P34897 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SHMT2P34897 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHMT2P34897 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.25■□□□□ 0.03
SHMT2P34897 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
SHMT2P34897 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHMT2P34897 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.25■□□□□ 0.03
SHMT2P34897 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHMT2P34897 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC15.25■□□□□ 0.03
SHMT2P34897 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHMT2P34897 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC15.25■□□□□ 0.03
SHMT2P34897 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.25■□□□□ 0.03
SHMT2P34897 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SHMT2P34897 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SHMT2P34897 SLC7A15P-201ENST00000424028 1363 ntBASIC15.24■□□□□ 0.03
SHMT2P34897 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SHMT2P34897 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHMT2P34897 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHMT2P34897 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
SHMT2P34897 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHMT2P34897 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHMT2P34897 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms